Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 2.8e-42 174.9 87 100.0
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 1.1e-25 119.8 83 74.7
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 1.4e-25 119.4 85 68.2
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.1e-22 109.8 86 67.4
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 4.1e-22 107.8 84 64.3
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 5.4e-22 107.5 86 66.3
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.1e-17 93.2 70 60.0
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 4.9e-15 84.3 59 66.1
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 6.4e-15 84.0 61 68.9
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 5.4e-14 80.9 59 62.7
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 7.1e-14 80.5 64 62.5
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 7.1e-14 80.5 64 57.8
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 1.2e-13 79.7 71 52.1
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.6e-13 79.3 64 56.2
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 2.1e-13 79.0 58 63.8
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.1e-13 79.0 50 64.0
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 2.7e-13 78.6 61 55.7
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 3.5e-13 78.2 64 65.6
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 4.6e-13 77.8 84 48.8
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 6.0e-13 77.4 60 56.7
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 6.0e-13 77.4 76 52.6
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 7.8e-13 77.0 56 62.5
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 7.8e-13 77.0 85 50.6
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 1.0e-12 76.6 48 66.7
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 1.0e-12 76.6 48 66.7
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 2.3e-12 75.5 64 51.6
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 5.1e-12 74.3 48 64.6
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 5.1e-12 74.3 48 64.6
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 5.1e-12 74.3 75 45.3
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 6.6e-12 73.9 63 54.0
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 8.7e-12 73.6 64 56.2
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 8.7e-12 73.6 67 58.2
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 1.1e-11 73.2 49 63.3
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 1.1e-11 73.2 49 63.3
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 1.5e-11 72.8 49 63.3
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 2.5e-11 72.0 48 62.5
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 2.5e-11 72.0 77 50.6
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 2.5e-11 72.0 77 50.6
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 2.5e-11 72.0 77 50.6
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.5e-11 72.0 74 47.3
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 2.5e-11 72.0 51 66.7
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 4.3e-11 71.2 82 53.7
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 5.6e-11 70.9 63 54.0
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 5.6e-11 70.9 65 58.5
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 9.6e-11 70.1 68 52.9
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 9.6e-11 70.1 68 52.9
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 9.6e-11 70.1 68 52.9
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 9.6e-11 70.1 84 45.2
C08p03110 Brassica napus HOM05D004372 ORTHO05D004331 1.3e-10 69.7 56 57.1
BolC8t47109H Brassica oleracea HOM05D004372 ORTHO05D004331 1.3e-10 69.7 56 57.1
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 1.3e-10 69.7 86 43.0
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.3e-10 69.7 68 52.9
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 1.3e-10 69.7 79 48.1
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 1.3e-10 69.7 63 55.6
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 1.6e-10 69.3 69 50.7
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.6e-10 69.3 78 51.3
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.1e-10 68.9 65 49.2
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 2.1e-10 68.9 58 51.7
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.1e-10 68.9 64 60.9
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 2.1e-10 68.9 68 52.9
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 2.8e-10 68.6 74 48.6
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 3.6e-10 68.2 64 51.6
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 3.6e-10 68.2 61 52.5
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 3.6e-10 68.2 69 50.7
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 4.8e-10 67.8 60 53.3
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 4.8e-10 67.8 61 54.1
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 4.8e-10 67.8 69 49.3
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 6.2e-10 67.4 64 51.6
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 6.2e-10 67.4 64 51.6
PGSC0003DMG400030326 Solanum tuberosum HOM05D004372 ORTHO05D004331 1.1e-09 66.6 77 46.8
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.4e-09 66.2 69 52.2
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 1.8e-09 65.9 77 51.9
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.8e-09 65.9 68 52.9
FAN16G1658 Fragaria x ananassa HOM05D023252 ORTHO05D025479 1.8e-09 65.9 83 49.4
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.8e-09 65.9 79 50.6
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 3.1e-09 65.1 55 56.4
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 3.1e-09 65.1 68 47.1
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 3.1e-09 65.1 60 46.7
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 4.0e-09 64.7 68 50.0
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 4.0e-09 64.7 58 50.0
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 4.0e-09 64.7 63 57.1
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 4.0e-09 64.7 49 71.4
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 4.0e-09 64.7 59 52.5
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 6.9e-09 63.9 57 52.6
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 6.9e-09 63.9 68 47.1
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 9.0e-09 63.5 61 52.5
Phvul.L007143 Phaseolus vulgaris HOM05D016115 ORTHO05D004331 9.0e-09 63.5 51 62.7
Solyc06g076310.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 9.0e-09 63.5 78 50.0
Sopen06g032730 Solanum pennellii HOM05D004372 ORTHO05D004331 9.0e-09 63.5 78 50.0
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 1.2e-08 63.2 62 50.0
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 1.2e-08 63.2 61 54.1
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 1.2e-08 63.2 73 46.6
QL07p048809 Quercus lobata HOM05D004372 ORTHO05D004331 1.2e-08 63.2 66 50.0
THA.LOC109117276 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.0e-08 62.4 75 45.3
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.6e-08 62.0 61 52.5
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.6e-08 62.0 61 52.5
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 2.6e-08 62.0 61 45.9
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 3.4e-08 61.6 60 51.7
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 3.4e-08 61.6 64 46.9
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 4.4e-08 61.2 76 48.7
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 4.4e-08 61.2 64 53.1
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 4.4e-08 61.2 74 45.9
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 4.4e-08 61.2 64 51.6
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 5.8e-08 60.8 64 51.6
Potri.008G057600 Populus trichocarpa HOM05D004372 ORTHO05D004331 5.8e-08 60.8 67 53.7
CAN.G394.69 Capsicum annuum HOM05D004372 ORTHO05D004331 7.6e-08 60.5 78 48.7
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 7.6e-08 60.5 56 53.6
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 9.9e-08 60.1 67 40.3
FAN21G1179 Fragaria x ananassa HOM05D023252 ORTHO05D025479 1.3e-07 59.7 85 45.9
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.3e-07 59.7 71 43.7
Atru.chr3.3970 Acer truncatum HOM05D004372 ORTHO05D004331 1.7e-07 59.3 74 51.4
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.7e-07 59.3 74 48.6
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 2.2e-07 58.9 52 63.5
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.2e-07 58.9 61 50.8
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 2.9e-07 58.5 52 55.8
Aa31LG1G22520 Aethionema arabicum HOM05D004372 ORTHO05D004331 3.8e-07 58.2 66 50.0
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 4.9e-07 57.8 65 44.6
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 4.9e-07 57.8 67 41.8
PGSC0003DMG400027224 Solanum tuberosum HOM05D004372 ORTHO05D004331 4.9e-07 57.8 66 42.4
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 4.9e-07 57.8 64 50.0
Zm00001eb211640 Zea mays HOM05D004372 ORTHO05D004331 4.9e-07 57.8 87 37.9
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 6.4e-07 57.4 68 42.6
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 6.4e-07 57.4 52 51.9
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 8.4e-07 57.0 74 45.9
Potri.009G034001 Populus trichocarpa HOM05D004372 ORTHO05D004331 8.4e-07 57.0 68 52.9
Lj3g0018051 Lotus japonicus HOM05D016115 ORTHO05D004331 1.1e-06 56.6 63 55.6
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.4e-06 56.2 67 52.2
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 2.4e-06 55.5 67 44.8
AL8G23740 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 3.2e-06 55.1 69 44.9
Eucgr.B02319 Eucalyptus grandis HOM05D004372 ORTHO05D004331 3.2e-06 55.1 81 54.3
Atru.chr8.1996 Acer truncatum HOM05D004372 ORTHO05D004331 4.2e-06 54.7 65 49.2
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 4.2e-06 54.7 64 50.0
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 5.4e-06 54.3 65 43.1
Medtr5g043320 Medicago truncatula HOM05D016115 ORTHO05D004331 5.4e-06 54.3 61 59.0
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 5.4e-06 54.3 67 38.8
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 7.1e-06 53.9 65 47.7
arahy.Tifrunner.gnm1.ann1.JA3FRH Arachis hypogaea HOM05D016115 ORTHO05D004331 9.3e-06 53.5 60 56.7


User provided reference genes

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