Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 8.8e-277 957.2 890 100.0
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.6e-193 680.6 891 72.3
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 3.8e-147 526.6 963 60.4
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 6.7e-144 515.8 949 62.5
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 3.3e-143 513.5 964 60.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 5.2e-136 489.6 964 59.5
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 3.5e-116 423.7 928 59.4
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 7.0e-109 399.4 921 55.7
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 6.4e-102 376.3 947 56.2
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 1.2e-100 372.1 924 54.7
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.2e-100 372.1 1037 56.5
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 3.0e-99 367.5 929 53.5
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 3.3e-98 364.0 715 61.0
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.1e-96 359.0 993 52.0
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.8e-96 358.2 917 51.3
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 2.4e-96 357.8 919 54.4
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 2.4e-96 357.8 919 54.4
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 5.4e-93 346.7 950 50.4
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.0e-91 342.4 917 56.4
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.3e-91 341.3 293 69.3
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 4.3e-90 337.0 928 53.9
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 7.6e-87 326.2 926 51.9
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.7e-86 325.1 912 51.5
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.2e-86 324.7 967 46.3
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 2.9e-86 324.3 918 53.8
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 3.2e-85 320.9 294 66.3
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 7.1e-85 319.7 304 63.8
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.6e-84 318.5 920 52.8
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 3.5e-84 317.4 932 49.8
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.1e-82 312.4 230 76.5
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.5e-82 312.0 302 63.9
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.3e-82 310.8 304 62.8
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 7.3e-82 309.7 294 63.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 9.6e-82 309.3 271 68.6
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.8e-81 307.8 302 65.2
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.1e-80 305.8 305 63.0
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.8e-80 305.1 302 63.9
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 4.5e-79 300.4 302 63.2
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.3e-78 298.9 248 69.4
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.7e-78 298.5 957 46.5
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 2.9e-78 297.7 300 62.0
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 8.4e-78 296.2 248 68.1
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.4e-77 294.7 930 49.4
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 2.4e-77 294.7 248 69.0
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.2e-77 294.3 296 63.2
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.2e-77 294.3 956 45.4
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.2e-76 292.4 911 53.1
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.6e-76 292.0 285 62.8
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.6e-76 292.0 284 62.3
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 6.0e-76 290.0 265 64.9
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.8e-75 288.5 905 52.2
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 5.1e-75 287.0 303 61.4
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.1e-74 285.8 302 57.9
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.9e-74 285.0 246 68.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 2.5e-74 284.6 937 49.2
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 3.3e-74 284.3 268 63.1
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 3.3e-74 284.3 251 64.9
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 3.3e-74 284.3 318 59.7
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 1.6e-73 282.0 719 59.5
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 4.8e-73 280.4 311 59.2
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.8e-73 280.4 924 49.1
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 6.2e-73 280.0 928 50.2
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 8.1e-73 279.6 234 70.1
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.4e-72 278.9 302 61.3
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.0e-72 277.3 954 44.3
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 5.3e-72 276.9 294 59.5
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.2e-71 275.8 930 49.2
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.6e-71 274.6 928 51.7
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.4e-71 274.2 299 59.9
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 7.6e-71 273.1 207 72.9
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 4.9e-70 270.4 247 66.4
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.1e-69 269.2 309 58.6
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.1e-69 269.2 933 51.4
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.4e-69 268.9 300 59.3
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.4e-69 268.1 278 61.9
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 4.2e-69 267.3 280 60.4
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 6.0e-68 263.5 280 60.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 6.0e-68 263.5 943 49.4
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.8e-67 261.9 217 68.2
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 2.3e-67 261.5 280 62.1
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.1e-66 259.2 270 59.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 2.5e-66 258.1 294 58.5
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 2.5e-66 258.1 281 61.9
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 3.7e-65 254.2 293 57.3
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 8.2e-65 253.1 233 63.9
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.4e-64 251.5 307 55.0
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 2.4e-64 251.5 163 79.8
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.3e-62 245.7 312 54.8
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.2e-62 245.0 312 54.5
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 2.2e-62 245.0 216 63.4
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.8e-62 244.2 280 57.9
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 8.4e-62 243.0 964 42.2
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 2.5e-61 241.5 313 53.7
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.5e-61 241.5 272 57.7
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.5e-61 241.5 272 57.7
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 2.5e-61 241.5 140 85.7
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 3.2e-61 241.1 305 54.4
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 4.2e-61 240.7 266 56.8
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.2e-60 239.2 927 36.7
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 6.0e-60 236.9 142 83.1
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.0e-59 234.6 135 88.1
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.9e-58 231.9 311 51.1
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.3e-57 229.2 304 51.6
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 3.7e-57 227.6 308 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 8.2e-57 226.5 281 55.9
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.1e-56 226.1 311 49.5
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.2e-55 222.6 277 55.6
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 7.7e-55 219.9 131 82.4
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 8.5e-54 216.5 242 57.0
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 7.2e-53 213.4 166 68.1
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.0e-51 209.5 301 50.2
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.4e-51 209.1 171 65.5
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 5.1e-51 207.2 225 63.1
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 3.3e-50 204.5 134 77.6
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 3.8e-46 191.0 157 66.9
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 5.5e-45 187.2 278 49.3
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 1.7e-41 175.6 147 63.3
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 3.3e-34 151.4 121 65.3
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 3.3e-34 151.4 134 64.2
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.2e-31 142.9 182 48.9
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.6e-31 142.5 127 60.6
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 2.0e-23 115.5 182 42.9
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 1.9e-21 109.0 147 42.9
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.4e-19 102.8 86 67.4
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 4.0e-19 101.3 395 39.5
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 7.5e-18 97.1 94 63.8
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.0e-14 86.7 57 75.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 2.2e-09 68.9 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.6e-07 62.8 179 30.7


User provided reference genes

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