Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 3.6e-207 724.9 443 100.0
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 3.7e-167 592.0 442 78.7
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 4.8e-167 591.7 442 78.7
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.3e-158 561.6 419 79.2
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.3e-143 513.8 451 69.2
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.7e-143 512.3 448 68.5
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.8e-142 510.0 452 69.0
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 9.1e-142 507.7 447 70.9
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.0e-140 504.2 444 67.3
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.9e-140 502.7 442 68.8
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.6e-138 496.9 444 68.5
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.8e-137 493.4 443 66.6
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 8.9e-137 491.1 451 66.1
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 8.3e-135 484.6 445 65.8
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 8.3e-135 484.6 445 65.8
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 1.1e-134 484.2 443 65.5
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 5.4e-134 481.9 451 65.6
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 2.7e-133 479.6 449 65.0
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 7.8e-133 478.0 440 63.9
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.7e-132 476.9 451 64.1
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.5e-131 473.8 433 68.1
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-131 473.8 443 64.8
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.3e-131 472.6 443 65.0
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-130 470.3 443 64.8
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 4.7e-130 468.8 449 64.1
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 6.1e-130 468.4 443 64.1
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 8.0e-130 468.0 440 63.9
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.0e-129 467.6 468 63.2
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-129 467.2 443 64.8
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.4e-129 467.2 449 65.5
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.5e-128 463.8 449 64.1
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.0e-128 463.4 443 62.8
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 3.4e-128 462.6 456 61.8
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.3e-127 460.7 444 60.6
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 9.2e-126 454.5 447 63.1
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.6e-125 453.8 452 60.6
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 2.7e-125 453.0 447 62.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.3e-124 450.7 447 60.4
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.7e-124 450.3 452 62.6
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.7e-124 450.3 421 65.1
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.5e-123 447.2 445 61.6
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.9e-123 446.8 450 61.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.3e-123 446.0 450 62.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 9.5e-123 444.5 445 60.7
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.2e-122 444.1 438 63.2
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 2.1e-122 443.4 443 60.7
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 3.6e-122 442.6 443 61.2
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 6.2e-122 441.8 446 60.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.0e-121 439.1 449 60.8
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 5.2e-121 438.7 456 60.5
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.5e-120 437.2 443 60.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 7.5e-120 434.9 478 57.9
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 9.8e-120 434.5 444 58.8
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.2e-119 433.3 447 59.7
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 2.2e-119 433.3 443 60.7
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.9e-119 433.0 447 61.1
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 3.7e-119 432.6 448 58.9
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 6.4e-119 431.8 443 59.6
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 8.3e-119 431.4 449 58.4
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 8.3e-119 431.4 447 60.9
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.4e-118 430.6 455 59.1
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.9e-118 430.3 440 60.5
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 5.4e-118 428.7 438 60.5
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.2e-117 427.6 453 57.6
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.6e-117 427.2 441 58.3
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 4.6e-117 425.6 440 59.8
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 4.6e-117 425.6 440 59.8
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 7.8e-117 424.9 443 58.9
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 7.8e-117 424.9 448 58.7
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.0e-116 424.5 461 56.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.3e-116 423.3 450 59.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 3.0e-116 422.9 444 58.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.9e-115 420.2 445 58.9
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.9e-115 420.2 450 58.0
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.6e-114 417.2 440 58.4
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.1e-114 416.8 449 56.6
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 8.1e-114 414.8 441 59.0
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.8e-113 413.7 445 57.5
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 5.2e-113 412.1 440 57.3
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 5.8e-112 408.7 448 56.9
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.7e-111 407.1 446 59.6
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 2.9e-111 406.4 448 58.7
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.1e-110 402.5 443 57.8
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.1e-109 400.2 432 58.3
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.1e-109 400.2 432 58.3
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 8.6e-108 394.8 450 55.3
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 9.6e-107 391.3 428 57.0
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-106 390.6 385 62.9
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.4e-105 387.5 445 56.0
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 6.8e-105 385.2 440 55.0
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.2e-104 384.4 447 57.7
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.5e-99 367.5 440 54.5
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.1e-98 363.6 440 53.6
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 8.1e-98 361.7 418 56.2
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 2.4e-97 360.1 359 67.1
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-91 340.9 353 60.6
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.1e-89 333.2 461 48.2
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 7.9e-85 318.5 319 61.1
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 5.6e-83 312.4 456 46.9
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.4e-78 297.7 444 46.8
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.5e-78 297.0 463 48.8
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.2e-78 296.6 387 49.9
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.2e-78 296.2 395 50.4
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.2e-77 294.7 367 51.0
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.7e-77 293.5 432 47.5
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.0e-72 277.3 425 45.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.6e-69 267.7 462 42.6
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.3e-68 264.6 419 46.3
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-67 260.8 275 58.2
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 6.9e-65 252.3 244 62.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.2e-64 251.5 362 47.2
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.1e-61 240.7 278 55.0
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.3e-60 237.3 202 68.8
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 7.4e-59 232.3 197 68.0
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 9.1e-57 225.3 245 60.4
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.3e-51 206.8 340 45.0
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.3e-50 204.9 274 52.9
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 3.7e-50 203.4 373 44.8
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 7.4e-43 179.1 272 47.4
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 3.5e-40 170.2 132 75.8
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 7.2e-38 162.5 201 50.2
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.7e-37 159.8 311 42.8
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.6e-35 154.1 451 32.2
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.8e-33 147.9 371 33.7
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 7.7e-32 142.5 216 49.5
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 3.8e-31 140.2 362 34.5
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 2.8e-26 124.0 438 28.5
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.4e-25 120.9 173 47.4
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.1e-25 120.6 193 44.6
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.7e-24 117.5 148 50.0
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 1.0e-20 105.5 92 67.4
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.8e-20 104.8 147 49.7
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-19 101.7 162 42.0
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.2e-18 97.8 101 61.4
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 3.7e-18 97.1 67 79.1
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 2.0e-16 91.3 62 80.6
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 4.6e-16 90.1 92 62.0
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.0e-12 79.0 132 40.2
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.8e-12 78.2 168 35.1
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 7.5e-11 72.8 68 64.7


User provided reference genes

Program Settings