Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 2.1e-77 292.4 156 100.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.1e-64 249.2 156 85.3
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.3e-63 245.7 156 79.5
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.9e-62 242.7 156 78.8
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.4e-60 236.5 156 83.3
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 3.7e-53 211.8 159 73.0
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.1e-48 196.1 159 61.6
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 7.9e-48 194.1 158 70.9
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.0e-47 193.7 157 70.7
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.8e-47 193.0 159 69.8
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 3.9e-47 191.8 156 67.3
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 5.1e-47 191.4 158 59.5
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 8.7e-47 190.7 158 59.5
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 4.3e-46 188.3 161 65.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 5.6e-46 188.0 156 62.2
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.6e-45 186.4 158 58.2
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.1e-45 186.0 159 59.1
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.1e-45 186.0 158 58.9
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.4e-44 183.3 153 58.2
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.8e-44 183.0 158 65.2
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.8e-44 183.0 159 59.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.8e-44 183.0 158 59.5
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 3.1e-44 182.2 164 65.9
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 3.1e-44 182.2 164 65.9
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 3.1e-44 182.2 164 65.9
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.1e-44 182.2 159 67.3
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 5.3e-44 181.4 135 70.4
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 7.6e-43 177.6 160 64.4
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.3e-42 176.8 160 67.5
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.9e-42 175.6 135 69.6
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.9e-42 175.6 160 54.4
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 3.8e-42 175.3 162 56.8
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.9e-42 174.9 138 60.1
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.9e-42 174.9 134 64.2
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 8.4e-42 174.1 157 66.9
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-41 173.7 164 56.1
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-41 173.7 164 56.1
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.1e-41 173.7 138 60.1
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.4e-41 173.3 141 60.3
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.9e-41 172.9 137 62.0
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.9e-41 172.9 160 63.8
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-41 172.6 162 56.2
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 3.2e-41 172.2 160 63.8
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 4.2e-41 171.8 158 63.3
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.2e-41 171.8 151 64.9
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 5.5e-41 171.4 161 54.7
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 7.1e-41 171.0 139 60.4
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 7.1e-41 171.0 152 61.8
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 9.3e-41 170.6 156 56.4
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 9.3e-41 170.6 137 61.3
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.3e-41 170.6 137 72.3
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.2e-40 170.2 163 63.8
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.6e-40 169.9 160 57.5
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.6e-40 169.9 153 56.2
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 2.1e-40 169.5 154 53.9
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 2.1e-40 169.5 135 61.5
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.1e-40 169.5 152 67.1
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.5e-40 168.7 165 63.6
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 3.5e-40 168.7 162 59.3
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 4.6e-40 168.3 142 59.2
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 4.6e-40 168.3 126 71.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 4.6e-40 168.3 156 65.4
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 6.0e-40 167.9 149 58.4
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 6.0e-40 167.9 137 66.4
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 7.9e-40 167.5 140 58.6
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.0e-39 167.2 165 56.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.0e-39 167.2 150 64.0
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.0e-39 167.2 160 56.9
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.3e-39 166.8 140 58.6
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.3e-39 166.8 156 58.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.8e-39 166.4 142 57.7
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.8e-39 166.4 156 54.5
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.3e-39 166.0 139 70.5
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 3.0e-39 165.6 157 56.7
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 3.0e-39 165.6 156 58.3
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 5.1e-39 164.9 145 57.2
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 6.7e-39 164.5 139 61.2
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 6.7e-39 164.5 158 53.8
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.7e-39 164.5 142 54.9
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.1e-38 163.7 153 62.1
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.1e-38 163.7 143 55.2
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.9e-38 162.9 152 59.9
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.9e-38 162.9 158 58.9
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 2.5e-38 162.5 156 55.1
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 3.3e-38 162.2 157 59.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.7e-38 160.6 142 68.3
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.6e-37 159.8 158 60.1
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.6e-37 159.8 156 59.0
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 2.8e-37 159.1 135 58.5
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.8e-37 159.1 89 75.3
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 2.8e-37 159.1 93 72.0
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.8e-37 159.1 151 59.6
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 4.8e-37 158.3 143 67.1
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 4.8e-37 158.3 155 60.6
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 6.3e-37 157.9 93 72.0
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.2e-37 157.5 160 56.2
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 8.2e-37 157.5 102 69.6
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 8.2e-37 157.5 136 56.6
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.1e-36 157.1 105 64.8
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.1e-36 155.6 156 57.7
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 9.0e-36 154.1 103 71.8
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.0e-35 152.9 131 59.5
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.5e-35 151.8 134 68.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 4.5e-35 151.8 101 68.3
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.0e-34 150.6 103 69.9
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.3e-34 150.2 130 62.3
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.7e-34 149.8 78 79.5
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.9e-34 149.1 130 62.3
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 5.0e-34 148.3 152 50.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 5.5e-33 144.8 149 49.7
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 7.2e-33 144.4 156 55.8
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.4e-31 140.2 156 56.4
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.4e-30 134.4 177 42.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.7e-29 133.3 135 62.2
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.8e-29 132.5 157 48.4
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.1e-28 130.6 175 46.9
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.4e-28 130.2 108 74.1
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 2.4e-28 129.4 284 37.0
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.1e-28 129.0 90 63.3
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 5.9e-27 124.8 79 68.4
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 3.8e-26 122.1 141 48.9
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.9e-25 119.8 85 65.9
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 3.2e-25 119.0 117 50.4
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.0e-23 114.0 52 90.4
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 3.9e-23 112.1 94 69.1
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 6.7e-23 111.3 54 87.0
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 5.3e-20 101.7 75 57.3
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.5e-19 100.1 90 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.2e-18 96.3 84 54.8
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 2.9e-18 95.9 126 42.9
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 4.2e-17 92.0 65 63.1
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.6e-16 89.0 87 51.7
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 8.0e-16 87.8 75 48.0
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.1e-14 84.0 71 57.7
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.0e-14 83.2 96 59.4
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 3.3e-14 82.4 83 73.5
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.7e-13 80.1 86 44.2
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 2.2e-10 69.7 75 42.7
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.5e-09 67.0 36 69.4
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-09 66.2 35 71.4
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 2.5e-09 66.2 39 71.8
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.2e-08 63.9 47 61.7


User provided reference genes

Program Settings