Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.5e-91 338.2 163 100.0
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.3e-87 324.3 163 94.5
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.2e-86 323.2 163 93.9
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 2.0e-86 322.4 163 93.9
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.4e-86 321.6 163 93.3
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.8e-86 320.9 163 93.3
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 4.6e-83 311.2 162 88.3
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.0e-83 310.8 163 86.5
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.9e-82 308.1 163 85.9
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.5e-81 306.2 163 85.9
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.9e-81 305.8 163 87.1
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.9e-81 305.8 163 87.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 2.5e-81 305.4 163 84.7
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.3e-80 303.1 163 84.0
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.1e-79 300.1 159 86.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.1e-79 300.1 163 86.5
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.4e-79 298.9 163 84.0
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.4e-79 298.9 162 84.6
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 6.9e-79 297.4 162 83.3
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 6.9e-79 297.4 163 81.6
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.2e-78 296.6 163 84.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 7.6e-78 293.9 163 84.0
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.5e-77 290.8 163 83.4
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 6.5e-77 290.8 163 79.8
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.1e-76 290.0 163 79.1
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 4.2e-76 288.1 148 89.9
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.2e-75 286.6 163 78.5
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.6e-75 284.6 151 84.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 7.9e-75 283.9 163 78.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.3e-74 282.3 163 80.4
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 3.0e-74 282.0 149 84.6
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 5.1e-74 281.2 154 84.4
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 5.1e-74 281.2 163 79.1
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 5.1e-74 281.2 151 82.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 5.1e-74 281.2 155 83.2
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 6.7e-74 280.8 163 78.5
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 8.7e-74 280.4 163 77.9
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 8.7e-74 280.4 163 77.3
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.1e-73 280.0 163 77.3
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.5e-73 279.6 163 76.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.5e-73 279.6 154 82.5
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.9e-73 279.3 163 79.1
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.5e-73 278.9 155 81.9
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 5.7e-73 277.7 163 77.3
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 7.4e-73 277.3 163 76.7
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 7.4e-73 277.3 163 76.1
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 7.4e-73 277.3 163 76.1
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 76.1
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 76.1
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 2.2e-72 275.8 163 75.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 75.5
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 74.8
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 74.8
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 74.2
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 1.4e-71 273.1 163 77.3
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.4e-71 273.1 163 74.8
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.8e-71 272.7 163 74.8
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.4e-71 272.3 163 77.9
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.1e-71 271.6 149 83.2
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.1e-71 271.6 149 83.2
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 5.3e-71 271.2 162 77.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 77.3
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 9.0e-71 270.4 152 78.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 76.7
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 3.4e-70 268.5 162 74.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.4e-70 268.5 157 75.8
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 5.9e-70 267.7 163 76.1
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.0e-69 266.9 163 74.2
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 76.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.9e-69 265.4 149 80.5
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 3.8e-69 265.0 153 79.7
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 5.0e-69 264.6 152 78.3
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 5.0e-69 264.6 152 78.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 6.5e-69 264.2 146 83.6
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 3.2e-68 261.9 152 77.0
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 9.4e-68 260.4 152 77.0
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.6e-67 258.5 149 78.5
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 6.1e-67 257.7 165 73.9
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.9e-67 257.3 152 77.6
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-66 256.5 165 72.7
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-66 256.5 165 72.7
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.8e-66 256.1 165 72.7
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.8e-66 256.1 164 72.6
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.3e-66 255.8 139 82.7
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 2.3e-66 255.8 165 72.7
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 3.0e-66 255.4 157 72.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.9e-66 255.0 144 80.6
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.5e-65 252.3 149 75.2
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.3e-65 251.9 144 78.5
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.7e-64 249.6 164 70.7
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 6.3e-64 247.7 144 76.4
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 6.3e-64 247.7 144 76.4
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.2e-64 247.3 141 78.7
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.4e-63 246.5 165 69.7
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.8e-63 246.1 163 69.9
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.4e-63 245.7 165 69.1
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 4.1e-63 245.0 165 69.7
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 5.3e-63 244.6 146 75.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 6.9e-63 244.2 165 70.3
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 2.0e-62 242.7 163 67.5
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.6e-62 242.3 178 65.2
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.3e-61 240.0 163 68.1
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-61 240.0 136 78.7
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.2e-61 239.2 165 67.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.4e-60 236.5 165 67.3
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.2e-60 235.0 142 75.4
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.6e-59 233.0 160 68.1
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.7e-59 231.5 139 74.1
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 4.7e-59 231.5 165 66.7
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.0e-58 230.3 144 72.9
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.4e-58 229.9 124 84.7
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 3.9e-58 228.4 163 69.9
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 8.8e-58 227.3 136 75.0
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 4.8e-56 221.5 146 64.4
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.6e-54 215.7 109 92.7
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 5.9e-54 214.5 163 63.8
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 6.7e-50 201.1 163 56.4
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 9.7e-49 197.2 163 55.2
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 7.7e-46 187.6 163 59.5
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.6e-43 179.9 123 68.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.0e-42 175.3 129 64.3
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 7.5e-41 171.0 150 56.7
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 6.3e-40 167.9 164 51.8
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.1e-39 167.2 164 51.8
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.4e-39 166.8 103 74.8
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.8e-39 166.4 97 79.4
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 2.4e-39 166.0 123 61.8
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 5.3e-39 164.9 176 54.0
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 9.1e-39 164.1 176 54.0
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.0e-37 160.6 163 50.9
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 9.4e-36 154.1 126 57.9
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.2e-35 153.7 164 49.4
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.7e-35 152.5 165 46.7
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.2e-33 147.1 138 58.0
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.6e-30 136.7 90 71.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.8e-27 125.9 139 46.0
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.5e-25 120.2 67 85.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-17 93.6 63 68.3
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.6e-14 83.6 121 38.8
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 4.6e-14 82.0 53 69.8
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.9e-12 76.6 62 62.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 8.0e-11 71.2 48 64.6
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.1e-10 69.3 58 56.9
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.7e-08 63.5 43 72.1
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.1e-07 60.8 46 58.7


User provided reference genes

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