Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 6.2e-146 520.8 264 100.0
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 4.7e-93 345.1 180 88.9
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 4.7e-93 345.1 188 86.2
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 4.8e-90 335.1 178 86.0
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.4e-89 333.6 176 86.4
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.1e-89 332.4 176 86.4
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.0e-80 303.1 182 77.5
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 3.3e-78 295.8 182 73.6
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 9.5e-78 294.3 180 74.4
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.6e-77 293.5 182 73.1
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 3.6e-77 292.4 183 73.2
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 4.7e-77 292.0 184 73.4
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 4.7e-77 292.0 183 72.1
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 4.7e-77 292.0 182 73.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.0e-76 290.8 184 70.1
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 2.3e-76 289.7 168 79.8
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 2.0e-75 286.6 187 71.7
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 5.7e-75 285.0 182 72.5
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 9.8e-75 284.3 183 71.0
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.3e-74 283.9 179 70.9
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.9e-74 282.7 183 70.5
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 6.4e-74 281.6 185 70.8
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.1e-73 280.8 178 70.2
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-73 280.8 183 70.5
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-73 280.8 183 71.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.8e-73 280.0 183 67.2
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.8e-73 280.0 185 68.1
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.4e-73 279.6 184 70.7
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 4.1e-73 278.9 177 70.1
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 5.4e-73 278.5 177 70.6
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.2e-72 277.3 183 68.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.6e-72 276.9 183 68.3
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.0e-72 276.6 179 68.7
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.7e-72 276.2 182 67.0
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 3.5e-72 275.8 175 69.7
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 5.9e-72 275.0 178 69.7
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 5.9e-72 275.0 182 66.5
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.3e-71 273.9 182 69.2
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.3e-71 273.9 182 65.9
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 6.6e-71 271.6 181 68.5
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 8.6e-71 271.2 178 67.4
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 8.6e-71 271.2 180 68.3
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.1e-70 270.8 183 67.2
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.5e-70 270.4 181 66.3
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.9e-70 270.0 187 65.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.9e-70 270.0 172 73.3
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.5e-70 269.6 177 68.4
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 5.6e-70 268.5 180 66.1
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 5.6e-70 268.5 184 64.1
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 7.3e-70 268.1 178 68.5
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 7.3e-70 268.1 180 68.3
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.2e-69 267.3 178 67.4
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.2e-69 267.3 178 67.4
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.6e-69 266.9 183 66.1
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 2.1e-69 266.5 177 66.7
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 2.1e-69 266.5 180 65.0
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 2.8e-69 266.2 176 67.6
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 3.6e-69 265.8 176 68.2
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 3.6e-69 265.8 176 69.3
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 6.2e-69 265.0 169 69.8
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 8.0e-69 264.6 182 65.4
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.0e-68 264.2 176 67.0
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.0e-68 264.2 174 69.0
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.4e-68 263.8 177 65.0
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.4e-68 263.8 182 64.8
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.4e-68 263.8 176 68.2
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.8e-68 263.5 182 65.4
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.8e-68 263.5 182 66.5
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 2.3e-68 263.1 172 69.8
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 3.1e-68 262.7 170 68.8
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 6.8e-68 261.5 177 68.4
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 2.0e-67 260.0 178 65.7
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 2.0e-67 260.0 179 65.9
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 2.6e-67 259.6 173 67.1
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 2.6e-67 259.6 173 67.1
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 3.4e-67 259.2 179 65.9
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 9.8e-67 257.7 178 65.2
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.4e-65 253.8 176 65.3
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 2.4e-65 253.1 177 65.0
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.4e-65 253.1 183 63.9
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 4.1e-65 252.3 183 63.9
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 4.1e-65 252.3 179 64.2
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 9.2e-65 251.1 173 65.3
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.0e-64 250.0 180 63.9
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 4.6e-64 248.8 177 63.3
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 7.8e-64 248.1 177 62.7
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 7.8e-64 248.1 177 63.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 7.8e-64 248.1 173 61.3
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.0e-63 247.7 174 64.4
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.9e-62 243.4 163 66.9
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.5e-62 241.1 154 69.5
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.6e-61 240.4 151 72.8
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.1e-61 240.0 154 68.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 4.7e-61 238.8 173 59.5
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.2e-59 234.2 175 62.3
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.2e-59 234.2 180 58.3
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.2e-59 234.2 180 58.3
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.7e-58 229.2 150 70.7
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 6.4e-58 228.4 155 65.2
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 8.3e-58 228.0 166 62.7
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.4e-57 226.5 149 69.8
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 1.2e-56 224.2 179 58.7
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 3.0e-55 219.5 154 63.0
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 8.1e-53 211.5 176 56.2
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 7.8e-48 194.9 187 48.7
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 8.6e-47 191.4 129 65.1
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.1e-46 191.0 187 47.1
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.1e-44 184.5 188 46.3
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 1.8e-44 183.7 171 47.4
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 9.9e-43 177.9 123 61.8
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 8.4e-42 174.9 138 60.1
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.4e-36 156.8 168 46.4
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 6.0e-32 142.1 131 55.7
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 9.3e-25 118.2 75 74.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 3.7e-21 106.3 152 36.8
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 6.9e-20 102.1 171 35.7
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 4.5e-19 99.4 179 37.4
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.0e-15 88.2 97 47.4
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 4.3e-14 82.8 59 57.6
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.3e-07 60.5 151 28.5
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.0e-07 60.1 151 28.5
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 3.9e-07 59.7 67 46.3
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 2.5e-06 57.0 155 27.1
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 5.7e-06 55.8 155 27.1


User provided reference genes

Program Settings