Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 9.1e-223 776.5 383 100.0
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 8.9e-186 653.7 357 88.0
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 7.1e-183 644.0 375 84.3
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.7e-181 639.4 375 82.9
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.4e-175 619.0 373 80.7
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.8e-149 533.1 385 69.4
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.3e-148 528.9 379 70.4
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 3.1e-146 522.3 383 69.7
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 5.3e-146 521.5 386 68.4
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 9.0e-146 520.8 287 86.8
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.2e-145 520.4 368 69.0
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 7.6e-145 517.7 287 86.8
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.2e-142 510.4 380 67.4
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.6e-142 510.0 376 67.6
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.9e-141 505.4 382 66.0
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.3e-140 501.9 386 65.5
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-138 496.9 382 64.7
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.4e-137 492.3 366 66.9
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.4e-137 492.3 371 67.4
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.0e-136 490.7 374 65.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.8e-136 488.8 345 70.7
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.5e-136 488.0 371 66.3
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 6.5e-136 488.0 372 65.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.1e-135 487.3 343 70.0
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 9.4e-135 484.2 333 70.9
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.6e-134 483.4 380 64.2
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.7e-134 482.6 353 68.3
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.4e-133 480.3 371 65.8
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.7e-133 478.0 371 65.5
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 5.7e-132 474.9 380 63.7
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.1e-130 470.7 368 65.2
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.8e-130 469.9 368 64.7
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 5.3e-130 468.4 383 61.1
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 9.1e-130 467.6 385 62.1
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.5e-128 461.5 397 61.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.9e-127 459.9 362 62.4
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.1e-126 456.4 375 61.3
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.4e-125 453.8 376 62.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.1e-125 451.8 386 59.3
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 2.4e-122 443.0 368 61.4
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 5.3e-122 441.8 323 67.8
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.5e-121 439.1 368 61.4
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 3.5e-121 439.1 368 61.1
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 4.5e-121 438.7 368 61.4
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 5.9e-121 438.3 329 65.0
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 8.5e-120 434.5 368 60.6
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.1e-119 434.1 367 59.7
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.9e-119 433.3 376 59.3
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.5e-119 433.0 368 60.6
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 4.2e-119 432.2 373 59.2
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 7.2e-119 431.4 373 62.5
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 9.4e-119 431.0 434 52.3
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.8e-117 426.8 367 60.2
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 6.7e-117 424.9 363 63.1
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 6.7e-117 424.9 345 64.6
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 6.7e-117 424.9 369 60.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.6e-116 422.9 324 67.6
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 3.3e-116 422.5 320 67.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 2.8e-115 419.5 320 67.8
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.7e-115 419.1 320 65.9
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 6.3e-115 418.3 372 58.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.1e-114 417.5 369 58.8
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 4.1e-114 415.6 372 58.6
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 9.1e-114 414.5 378 59.8
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.6e-113 413.7 334 65.9
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 2.0e-113 413.3 376 57.4
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 4.5e-113 412.1 320 65.3
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 4.5e-113 412.1 367 58.9
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.5e-113 412.1 369 57.5
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.9e-113 411.8 376 59.8
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 7.7e-113 411.4 367 59.1
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 2.2e-112 409.8 329 66.0
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 2.9e-112 409.5 367 59.4
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 8.5e-112 407.9 380 58.9
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.5e-111 407.1 373 56.6
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.5e-111 406.4 367 58.6
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 5.5e-111 405.2 326 65.6
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 5.5e-111 405.2 370 58.4
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.2e-110 404.1 376 57.4
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.6e-110 403.7 382 58.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.6e-110 403.7 357 58.5
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 2.1e-110 403.3 366 57.9
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 3.6e-110 402.5 355 58.6
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 4.7e-110 402.1 342 60.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 8.0e-110 401.4 381 55.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.0e-109 401.0 333 64.6
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 8.8e-109 397.9 316 62.7
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.5e-108 397.1 376 55.1
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.2e-107 393.3 372 56.2
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 4.1e-106 389.0 388 55.2
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.5e-105 385.6 326 63.8
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 7.7e-105 384.8 270 71.5
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 2.9e-104 382.9 324 59.3
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 3.8e-104 382.5 341 57.5
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 4.2e-103 379.0 382 53.9
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 5.5e-103 378.6 367 54.8
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.1e-102 376.7 369 55.3
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 3.6e-102 375.9 351 54.1
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.4e-101 374.0 382 53.4
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.3e-101 373.2 338 58.0
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.0e-101 372.5 269 66.5
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.0e-96 357.8 362 53.6
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 2.8e-94 349.7 323 54.5
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.0e-93 346.3 368 50.5
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 4.0e-93 345.9 288 60.8
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 3.4e-92 342.8 278 64.7
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.3e-91 338.2 338 53.8
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.8e-86 323.2 324 52.5
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.0e-85 321.2 274 59.1
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.5e-84 317.4 351 48.4
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 5.8e-84 315.5 319 53.3
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.1e-77 294.7 285 53.0
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 3.1e-77 293.1 286 52.1
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.5e-71 274.2 191 71.7
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.5e-71 273.5 262 56.5
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.1e-69 268.1 243 56.0
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.1e-63 248.1 281 44.5
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 9.6e-63 245.0 291 47.1
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.6e-62 243.0 163 74.2
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.6e-62 243.0 279 45.5
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 4.4e-60 236.1 287 45.3
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.7e-59 234.2 280 42.9
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.1e-58 231.5 270 45.2
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 9.9e-52 208.4 296 41.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.3e-43 181.4 168 58.9
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 4.9e-35 152.9 136 57.4
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.5e-34 150.6 136 56.6
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 2.6e-28 130.6 86 69.8
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 2.2e-22 110.9 104 58.7
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 3.4e-20 103.6 85 61.2
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.5e-18 96.3 178 36.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.1e-17 94.4 120 48.3
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.1e-17 94.4 120 48.3
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.4e-16 91.7 77 62.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 9.7e-15 85.5 94 51.1
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.2e-10 70.5 100 37.0
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.8e-08 64.7 71 49.3
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 5.7e-07 59.7 67 53.7
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 5.7e-07 59.7 55 54.5
BcaB01g04637 Brassica carinata HOM05D005476 ORTHO05D021669 2.2e-06 57.8 51 60.8
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 2.2e-06 57.8 67 52.2


User provided reference genes

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