Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 6.6e-151 537.3 271 100.0
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 1.3e-111 406.8 273 77.7
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 3.2e-97 359.0 266 69.9
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.2e-97 358.6 266 69.5
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.1e-92 342.0 266 68.0
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 8.8e-87 324.3 271 64.2
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.2e-85 319.7 245 70.2
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 6.3e-85 318.2 272 63.6
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 4.1e-84 315.5 271 63.1
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.3e-82 310.5 273 61.2
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 8.5e-82 307.8 269 62.5
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 2.1e-80 303.1 267 62.2
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 8.0e-80 301.2 227 67.4
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 2.3e-79 299.7 273 61.5
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 8.8e-79 297.7 275 60.4
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 1.1e-78 297.4 271 60.1
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 5.7e-78 295.0 283 59.0
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 9.7e-78 294.3 288 57.3
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 9.7e-78 294.3 257 63.8
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 1.7e-77 293.5 246 63.8
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 2.8e-77 292.7 276 58.3
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 2.8e-77 292.7 273 60.8
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 3.7e-77 292.4 268 60.4
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 6.3e-77 291.6 269 59.1
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 1.1e-76 290.8 272 61.0
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.8e-76 290.0 275 57.8
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 4.1e-76 288.9 229 64.2
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 4.1e-76 288.9 269 58.4
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 5.3e-76 288.5 269 61.0
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 9.1e-76 287.7 267 59.6
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 9.1e-76 287.7 243 63.0
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 3.5e-75 285.8 267 58.4
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 1.3e-74 283.9 249 59.0
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.7e-74 283.5 276 56.9
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 2.9e-74 282.7 281 56.6
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 2.9e-74 282.7 274 58.0
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 2.9e-74 282.7 264 56.8
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 2.9e-74 282.7 236 63.1
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.8e-74 282.3 269 57.2
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 3.8e-74 282.3 269 57.2
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.5e-74 281.6 266 59.4
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 8.5e-74 281.2 300 53.7
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.1e-73 280.8 271 58.7
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 1.5e-73 280.4 268 57.8
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.9e-73 280.0 228 64.0
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 3.2e-73 279.3 266 59.0
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 5.5e-73 278.5 267 58.8
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 9.4e-73 277.7 267 56.2
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.6e-72 276.9 266 58.3
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.1e-72 275.0 266 58.6
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 6.1e-72 275.0 229 60.3
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 2.3e-71 273.1 260 55.4
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 3.0e-71 272.7 237 61.2
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.5e-70 270.4 259 57.5
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 2.0e-70 270.0 262 55.3
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 7.5e-70 268.1 263 55.5
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.7e-69 266.9 263 56.3
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 2.2e-69 266.5 225 61.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.7e-69 265.8 269 55.4
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 4.1e-68 262.3 275 56.4
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.2e-67 260.8 267 53.6
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.2e-67 260.8 267 57.3
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.7e-67 259.6 246 58.5
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 4.5e-67 258.8 256 55.1
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 5.9e-67 258.5 270 54.8
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 7.7e-67 258.1 274 54.7
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.3e-66 257.3 261 55.6
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 3.8e-66 255.8 263 55.1
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 6.5e-66 255.0 256 53.1
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 8.5e-66 254.6 235 60.9
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 8.5e-66 254.6 250 55.6
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.5e-65 253.8 265 54.0
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.5e-65 253.8 265 54.0
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.9e-65 253.4 255 54.9
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 9.4e-65 251.1 219 63.5
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 1.2e-64 250.8 258 53.9
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.2e-64 250.8 261 54.8
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 3.6e-64 249.2 238 58.4
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.0e-63 247.7 246 56.1
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 4.4e-62 242.3 227 57.7
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 4.4e-62 242.3 178 70.2
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.8e-61 239.6 205 62.0
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 1.6e-59 233.8 270 50.7
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 9.5e-57 224.6 234 58.1
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 3.0e-55 219.5 239 53.1
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 7.5e-54 214.9 211 55.5
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 4.9e-53 212.2 274 50.7
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 6.3e-53 211.8 204 57.4
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 1.1e-52 211.1 256 48.8
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.7e-50 203.8 272 45.2
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.9e-49 200.3 233 52.8
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 2.1e-48 196.8 231 50.2
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 5.2e-47 192.2 274 47.1
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 5.2e-47 192.2 269 46.5
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 6.8e-47 191.8 351 38.7
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 8.9e-47 191.4 215 51.2
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.2e-46 191.0 215 50.7
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.2e-46 191.0 215 51.2
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.2e-46 191.0 215 50.7
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 5.8e-46 188.7 267 45.7
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 1.3e-45 187.6 275 46.9
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 1.7e-45 187.2 249 46.6
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 3.7e-45 186.0 209 51.2
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 4.9e-45 185.7 213 51.6
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 6.4e-45 185.3 249 46.2
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 1.1e-44 184.5 209 50.7
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 3.2e-44 183.0 231 46.8
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.0e-42 177.9 242 45.0
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 7.3e-41 171.8 157 58.0
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.1e-39 167.9 103 83.5
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 3.1e-39 166.4 119 66.4
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 2.6e-38 163.3 184 52.7
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 4.4e-38 162.5 173 52.0
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 1.6e-35 154.1 178 51.7
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 3.1e-31 139.8 98 68.4
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 6.4e-29 132.1 169 45.0
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 7.1e-28 128.6 178 42.7
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.2e-27 127.9 87 73.6
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.2e-27 127.9 147 47.6
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 3.9e-26 122.9 186 43.0
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 8.6e-26 121.7 82 73.2
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 6.2e-24 115.5 125 52.0
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 6.2e-24 115.5 210 39.0
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 2.0e-22 110.5 214 37.4
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 2.4e-20 103.6 66 78.8
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.1e-19 100.5 72 66.7
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 5.1e-18 95.9 220 34.1
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.4e-15 87.8 63 66.7
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 4.0e-15 86.3 48 89.6
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-13 79.7 121 39.7
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 5.4e-12 75.9 148 38.5
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 1.9e-09 67.4 70 48.6
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 4.0e-07 59.7 88 42.0


User provided reference genes

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