Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 9.8e-221 770.0 439 100.0
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.6e-151 540.0 459 66.7
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.9e-150 534.6 439 69.0
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.3e-148 530.4 439 68.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.9e-147 526.6 439 68.3
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 9.4e-147 524.2 421 74.1
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.0e-133 479.9 374 72.7
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 4.1e-86 322.8 449 47.0
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 1.2e-82 311.2 457 46.6
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.8e-82 310.1 446 50.0
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.0e-81 306.2 428 47.7
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 8.3e-79 298.5 450 48.0
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 5.1e-76 289.3 441 51.7
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.1e-75 288.1 449 44.3
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.6e-74 284.3 429 44.3
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 3.2e-62 243.4 439 40.1
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.9e-59 234.2 452 40.0
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 2.1e-58 230.7 433 38.8
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 4.8e-58 229.6 439 40.1
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.8e-58 229.6 439 42.6
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 2.0e-56 224.2 457 43.1
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.4e-54 218.0 430 42.3
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.3e-54 215.3 448 40.6
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.6e-53 214.5 452 40.0
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.0e-52 211.8 448 40.4
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 3.0e-52 210.3 440 43.9
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.7e-52 209.1 448 40.2
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 1.1e-51 208.4 444 39.0
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.9e-51 207.6 447 37.6
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 3.3e-51 206.8 439 40.1
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 5.6e-51 206.1 449 40.3
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 6.2e-50 202.6 455 36.5
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 3.1e-49 200.3 442 36.0
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.0e-47 195.3 450 37.1
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.3e-47 194.9 432 36.1
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.3e-47 194.9 444 36.9
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.7e-47 194.5 433 36.0
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 9.3e-46 188.7 426 38.7
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.2e-45 188.3 468 36.1
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 4.6e-45 186.4 434 34.8
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.0e-44 185.3 448 34.8
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 3.9e-44 183.3 448 37.9
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.9e-43 181.0 448 37.7
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 7.4e-43 179.1 413 36.6
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 2.8e-42 177.2 449 35.0
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 4.8e-42 176.4 470 34.5
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.1e-41 175.3 434 35.7
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.1e-41 175.3 447 37.1
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.8e-41 174.5 434 35.7
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 3.1e-41 173.7 434 36.6
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 9.0e-41 172.2 426 35.0
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 2.0e-40 171.0 469 34.3
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 6.5e-39 166.0 424 35.8
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.4e-38 164.9 472 34.1
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 5.5e-38 162.9 444 34.7
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 7.2e-38 162.5 446 35.4
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 1.6e-37 161.4 431 33.4
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.7e-37 160.6 446 34.8
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 3.5e-37 160.2 325 38.5
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 6.1e-37 159.5 439 33.7
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 7.9e-37 159.1 407 34.6
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 5.1e-36 156.4 421 32.3
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 2.2e-34 151.0 407 38.1
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.1e-33 148.7 429 34.0
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 1.8e-33 147.9 440 34.3
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 1.8e-33 147.9 436 33.7
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 4.1e-33 146.7 455 32.3
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 9.0e-33 145.6 434 34.6
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 2.6e-32 144.1 449 32.3
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 3.4e-32 143.7 441 35.8
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 4.5e-32 143.3 435 39.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 7.7e-32 142.5 329 39.2
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.2e-31 141.0 450 34.9
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 2.9e-31 140.6 406 32.5
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 5.0e-31 139.8 413 32.7
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.9e-30 137.9 422 29.1
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 4.2e-30 136.7 430 30.5
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 5.5e-30 136.3 410 30.0
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 5.5e-30 136.3 427 32.3
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.2e-29 135.2 441 30.6
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.1e-29 134.4 447 32.9
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 6.1e-29 132.9 439 31.0
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 3.0e-28 130.6 434 31.8
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.9e-28 130.2 454 29.3
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 3.9e-28 130.2 366 33.9
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 2.5e-27 127.5 398 32.7
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 4.3e-27 126.7 458 32.1
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 4.3e-27 126.7 199 45.2
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.3e-26 125.2 438 28.3
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 3.7e-26 123.6 426 28.9
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 4.8e-26 123.2 430 32.1
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 6.3e-26 122.9 424 28.5
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.8e-25 121.3 431 28.8
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 9.1e-25 119.0 438 34.0
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.2e-24 118.6 446 30.3
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.5e-24 118.2 426 27.7
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 5.9e-24 116.3 422 29.6
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 1.7e-23 114.8 428 30.4
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.7e-23 114.8 419 31.3
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 2.2e-23 114.4 428 33.2
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 3.8e-23 113.6 437 33.4
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 3.8e-23 113.6 429 28.7
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.0e-20 105.5 416 32.0
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 1.4e-20 105.1 422 31.5
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.4e-20 105.1 422 27.5
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.8e-20 104.8 435 28.3
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.3e-20 104.4 420 32.9
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 5.1e-20 103.2 429 30.5
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 5.1e-20 103.2 429 30.5
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.1e-20 103.2 315 31.7
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.1e-20 103.2 416 32.5
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 6.7e-20 102.8 171 40.4
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.7e-20 102.8 426 27.7
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 6.7e-20 102.8 421 29.7
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 1.5e-19 101.7 348 30.7
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.0e-19 101.3 434 29.0
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 5.7e-19 99.8 429 31.0
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 7.4e-19 99.4 421 28.3
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 9.7e-19 99.0 436 37.6
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 1.3e-18 98.6 436 33.5
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.3e-18 98.6 185 40.5
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.8e-18 97.4 422 27.3
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 3.7e-18 97.1 405 27.4
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 4.8e-18 96.7 344 30.5
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.1e-17 95.5 176 39.8
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.8e-17 94.7 457 28.0
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.8e-17 94.7 318 34.9
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 4.1e-17 93.6 452 33.4
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 7.0e-17 92.8 425 29.2
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 1.2e-16 92.0 423 27.4
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.6e-16 91.7 156 40.4
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.5e-16 90.5 181 36.5
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 3.5e-16 90.5 413 27.8
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 4.5e-16 90.1 414 28.7
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.5e-16 90.1 181 36.5
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 1.0e-15 89.0 436 28.4
Medtr5g071090 Medicago truncatula HOM05D003726 ORTHO05D003520 1.0e-15 89.0 430 29.3
Carub.0008s1925 Capsella rubella HOM05D011448 ORTHO05D003520 1.3e-15 88.6 341 27.9
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.2e-15 87.8 336 29.5
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 3.8e-15 87.0 423 28.6
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 5.0e-15 86.7 439 29.4
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 8.5e-15 85.9 434 26.5
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 8.5e-15 85.9 182 37.9
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.1e-14 85.5 290 28.6
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 1.1e-14 85.5 415 26.5
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 1.5e-14 85.1 184 37.0
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 2.5e-14 84.3 425 30.1
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 2.5e-14 84.3 418 27.3
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.2e-14 84.0 300 30.3
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.2e-14 83.6 107 53.3
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 5.5e-14 83.2 409 25.9
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 7.2e-14 82.8 123 43.9
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 1.2e-13 82.0 304 31.6
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.6e-13 81.6 405 24.9
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.6e-13 81.6 405 24.9
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 2.7e-13 80.9 419 26.3
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 6.1e-13 79.7 433 25.6
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.0e-12 79.0 173 37.6
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 1.4e-12 78.6 437 26.5
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.8e-12 78.2 423 27.9
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 2.3e-12 77.8 424 28.1
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 3.0e-12 77.4 183 34.4
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 1.5e-11 75.1 433 27.9
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.0e-11 74.7 148 35.1
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.6e-11 74.3 419 28.2
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.3e-10 72.0 324 26.9
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 3.7e-10 70.5 133 36.1
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 1.4e-09 68.6 407 26.8
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 2.4e-09 67.8 132 36.4
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 5.3e-09 66.6 397 25.7
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 1.2e-08 65.5 440 24.1
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 1.6e-08 65.1 440 28.4
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.0e-08 64.7 378 25.4
ECA236G2409 Erigeron canadensis HOM05D000674 ORTHO05D001490 3.5e-08 63.9 389 26.7
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-07 62.4 378 25.1
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 6.5e-07 59.7 425 27.1
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 1.1e-06 58.9 424 24.3
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.9e-06 58.2 421 26.8
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 1.9e-06 58.2 421 26.8
BcaC09g48271 Brassica carinata HOM05D011448 ORTHO05D003520 9.4e-06 55.8 106 42.5
C01p52290 Brassica napus HOM05D011448 ORTHO05D003520 9.4e-06 55.8 106 42.5
BolC1t05169H Brassica oleracea HOM05D011448 ORTHO05D003520 9.4e-06 55.8 106 42.5
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 9.4e-06 55.8 174 30.5
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 9.4e-06 55.8 423 25.5


User provided reference genes

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