Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 8.9e-117 423.7 228 100.0
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.9e-99 365.5 225 87.6
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 6.4e-99 364.4 228 86.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 6.4e-99 364.4 225 87.1
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.3e-96 355.9 228 86.0
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.2e-92 343.6 214 88.3
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.3e-88 330.1 226 77.9
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.1e-85 320.5 226 76.5
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.4e-84 315.5 223 75.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.3e-83 313.5 226 73.5
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.9e-82 309.7 226 72.1
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.9e-82 309.7 227 72.2
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 9.3e-82 307.4 226 69.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 2.7e-81 305.8 226 73.0
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 6.1e-81 304.7 219 70.3
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.0e-80 303.9 215 69.3
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.3e-80 303.5 227 74.4
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 2.3e-80 302.8 224 72.3
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.0e-80 302.4 227 73.1
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 3.0e-80 302.4 230 73.5
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 3.9e-80 302.0 227 65.2
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 5.1e-80 301.6 229 73.8
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 6.7e-80 301.2 224 71.9
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-79 300.4 222 68.0
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.5e-79 300.1 222 67.6
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.5e-79 300.1 230 70.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.5e-79 300.1 227 64.8
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.9e-79 299.7 221 67.0
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 3.3e-79 298.9 221 67.9
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 9.7e-79 297.4 218 68.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.3e-78 297.0 221 72.9
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.6e-78 296.6 237 62.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.2e-78 296.2 222 73.4
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.2e-78 296.2 226 70.8
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.2e-78 296.2 223 74.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.2e-78 296.2 223 70.9
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.7e-78 295.4 227 65.6
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 6.3e-78 294.7 219 68.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 6.3e-78 294.7 226 73.0
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 6.3e-78 294.7 226 71.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 8.2e-78 294.3 174 79.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.1e-77 293.9 221 66.1
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.8e-77 293.1 227 67.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.4e-77 292.7 222 66.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 3.1e-77 292.4 227 63.9
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 5.3e-77 291.6 226 72.1
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.9e-77 291.2 223 70.4
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 9.0e-77 290.8 228 68.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.2e-76 290.4 228 70.2
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.5e-76 290.0 222 68.5
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-76 289.7 218 69.3
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.0e-76 289.7 218 69.3
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 3.4e-76 288.9 224 70.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.5e-76 288.5 219 66.7
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 7.7e-76 287.7 227 68.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-75 287.3 230 67.8
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.7e-75 286.6 224 69.6
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.9e-75 285.8 248 59.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.9e-75 285.8 232 69.0
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.8e-75 285.4 228 69.3
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.8e-75 285.4 226 69.0
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 6.5e-75 284.6 224 67.0
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 6.5e-75 284.6 232 68.1
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-74 283.9 231 68.4
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.9e-74 283.1 221 64.7
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.5e-74 282.7 164 82.3
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.5e-74 282.7 225 69.8
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.5e-74 282.7 260 60.4
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 2.5e-74 282.7 233 62.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.5e-74 282.7 221 64.3
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 4.2e-74 282.0 225 69.8
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.2e-74 282.0 230 61.7
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.6e-73 280.0 230 66.1
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.7e-73 279.3 218 71.1
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.7e-73 279.3 231 67.1
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 7.9e-73 277.7 229 61.6
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.9e-73 277.7 221 63.8
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.3e-72 276.2 229 61.1
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 3.0e-72 275.8 219 69.4
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.9e-72 275.4 215 67.9
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 6.7e-72 274.6 248 63.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 6.7e-72 274.6 217 69.1
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.1e-71 273.9 269 60.6
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 2.0e-71 273.1 224 66.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 2.5e-71 272.7 247 62.8
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.3e-71 272.3 166 75.3
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 4.3e-71 271.9 232 61.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 5.7e-71 271.6 177 72.3
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 9.7e-71 270.8 224 68.8
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 9.7e-71 270.8 231 58.0
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.7e-70 270.0 226 61.5
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.8e-70 269.2 226 61.5
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.7e-70 268.9 231 63.2
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 6.3e-70 268.1 223 65.5
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-69 266.9 230 66.1
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-69 266.9 227 66.5
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.8e-69 266.5 229 60.3
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-69 266.5 226 61.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.4e-69 266.2 242 62.8
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 4.1e-69 265.4 216 62.5
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 5.3e-69 265.0 262 56.9
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 9.1e-69 264.2 234 57.7
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.0e-68 263.1 222 65.8
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 3.4e-68 262.3 224 65.6
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.5e-68 261.9 221 65.2
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.2e-67 259.6 253 59.3
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.9e-67 259.2 215 60.0
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 6.5e-67 258.1 211 62.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.2e-66 255.8 223 57.8
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 5.5e-66 255.0 224 62.9
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.2e-65 253.8 203 64.5
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 3.6e-65 252.3 225 62.7
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 5.1e-64 248.4 223 62.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 2.0e-63 246.5 229 60.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.6e-63 246.1 242 55.0
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.3e-63 245.7 197 70.1
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.4e-63 245.4 232 59.9
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 7.4e-63 244.6 245 56.3
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.3e-62 243.8 222 55.4
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.8e-62 241.9 221 62.9
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.3e-62 241.5 233 54.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.1e-61 240.7 278 50.4
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-61 239.6 229 57.2
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.1e-61 239.2 254 53.1
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 4.1e-61 238.8 229 56.8
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-61 238.8 229 56.8
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-61 238.8 229 56.8
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 5.3e-61 238.4 246 53.3
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.0e-60 236.5 143 76.2
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.0e-59 234.2 224 57.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 2.2e-59 233.0 138 77.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 5.0e-59 231.9 216 57.4
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 5.0e-59 231.9 227 57.3
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 1.4e-56 223.8 139 76.3
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-54 215.7 275 47.3
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 6.3e-54 214.9 137 74.5
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.7e-52 208.0 130 77.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.9e-51 206.1 179 59.2
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 8.5e-51 204.5 238 51.7
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.5e-50 203.8 141 68.8
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.2e-49 200.7 133 71.4
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 4.7e-49 198.7 128 75.8
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.0e-49 198.0 138 65.9
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 7.7e-44 181.4 160 52.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 4.2e-42 175.6 127 66.9
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.1e-41 173.3 134 62.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 4.7e-33 145.6 129 62.0
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.9e-32 141.4 92 68.5
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 4.9e-30 135.6 93 67.7
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.9e-28 128.6 240 41.7
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 7.8e-28 128.3 90 71.1
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 7.3e-26 121.7 115 54.8
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 7.5e-23 111.7 156 36.5
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 8.3e-22 108.2 79 67.1
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 4.6e-20 102.4 123 37.4
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 6.6e-19 98.6 178 33.1
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.6e-17 94.0 102 62.7
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 4.7e-17 92.4 80 61.2
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 4.0e-16 89.4 118 40.7
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.7e-14 84.0 124 33.9
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.9e-14 83.2 117 35.9
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.4e-13 80.9 69 59.4
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 5.1e-11 72.4 85 64.7
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.3e-10 69.7 93 57.0
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.6e-09 67.4 96 56.2
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.1e-09 67.0 88 59.1
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 1.1e-08 64.7 56 55.4
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 1.3e-06 57.8 63 44.4


User provided reference genes

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