Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 2357.8 1220 100.0
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 2019.6 1219 86.3
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1952.2 1230 82.8
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1942.9 1229 82.8
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1911.3 1230 81.6
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1874.8 1138 86.1
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1532.3 1210 67.0
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1528.8 1210 66.9
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1524.2 1230 66.3
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1520.0 1222 66.9
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1513.8 1224 66.5
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1511.5 1221 66.7
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1488.4 1203 66.3
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1486.9 1192 65.9
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1481.1 1219 65.7
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1475.7 1230 65.6
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1442.6 1231 64.7
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1424.5 1230 62.7
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1418.3 1188 63.9
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1416.7 1219 63.3
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1414.8 1293 60.6
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1393.6 1218 63.5
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1390.6 1177 63.6
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1387.5 1280 60.2
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1374.8 1234 61.3
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1370.5 1182 62.1
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1355.5 1226 60.6
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1343.6 1238 59.2
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1337.4 1217 60.6
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1334.3 1239 59.0
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1332.0 1226 60.4
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1330.5 1192 60.4
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1326.6 1173 61.4
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1324.7 1227 59.0
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1323.5 1220 59.3
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1321.6 1220 59.2
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1309.3 1224 60.3
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1305.0 1172 59.9
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1302.7 1179 59.8
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1298.9 1167 60.2
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1298.1 1294 56.2
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1295.0 1219 60.4
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1287.3 1258 56.9
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1270.8 1218 57.6
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1259.2 1092 63.1
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1245.7 1194 57.5
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1232.2 1263 55.5
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1231.1 1231 56.6
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1221.1 1228 56.0
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1219.5 1249 55.1
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1218.4 1232 56.1
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1213.7 1248 55.4
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1213.4 1258 54.7
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1208.4 1253 54.7
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1203.0 1301 53.4
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1189.5 1261 54.2
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1173.7 1216 55.1
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1168.7 1023 62.9
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1159.4 1207 54.8
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1155.6 1186 54.9
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 0.0e+00 1151.0 1219 54.6
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 1147.5 1229 54.8
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1126.7 1235 53.4
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1125.9 1233 53.0
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1124.0 1242 52.6
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 0.0e+00 1102.8 1226 51.4
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1100.5 1168 53.3
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 0.0e+00 1090.1 1190 52.4
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 0.0e+00 1088.2 1244 50.6
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 0.0e+00 1082.0 1235 51.8
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1075.8 1291 49.1
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 0.0e+00 1075.5 1186 52.4
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 5.3e-309 1064.7 1229 49.6
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 3.6e-305 1052.0 1178 52.0
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 2.0e-300 1036.2 1227 49.7
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.6e-295 1019.2 1116 52.3
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 7.3e-290 1001.1 828 66.3
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 1.6e-289 1000.0 1073 52.8
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 3.0e-288 995.7 1036 54.8
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 2.0e-287 993.0 1231 47.9
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 2.0e-271 939.9 1284 46.0
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 4.4e-271 938.7 742 67.1
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 2.4e-269 932.9 1172 46.2
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 1.9e-253 880.2 1220 43.4
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.0e-251 874.4 811 60.8
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 3.7e-241 839.3 1060 46.6
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.4e-224 784.3 1211 43.8
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 5.5e-221 772.3 1000 45.4
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 5.4e-184 649.4 615 55.4
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 3.3e-173 613.6 1233 35.4
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 9.5e-173 612.1 1177 36.0
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.3e-158 565.1 1147 37.2
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 2.2e-153 547.7 1240 33.9
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 9.3e-136 489.2 621 49.4
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 7.4e-125 453.0 391 59.6
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 8.2e-116 422.9 394 56.6
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 8.5e-97 359.8 444 50.9
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.1e-80 306.2 521 39.5
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 4.2e-72 277.7 1323 25.7
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 2.8e-68 265.0 387 40.1
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.9e-44 185.3 212 50.0
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 8.6e-41 173.7 271 41.3
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 7.6e-37 160.6 265 38.1
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 3.6e-31 141.7 185 47.6
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.4e-30 139.0 86 70.9
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 2.0e-29 136.0 161 51.6
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 2.6e-29 135.6 110 66.4
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 1.1e-27 130.2 197 44.7
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 1.0e-25 123.6 91 59.3
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 5.6e-24 117.9 76 71.1
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 2.8e-23 115.5 151 46.4
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.8e-23 115.5 105 52.4
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.4e-21 108.6 83 61.4
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 8.1e-07 60.8 74 40.5


User provided reference genes

Program Settings