Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 9.3e-99 363.6 193 100.0
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 1.0e-92 343.6 192 94.8
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.9e-92 342.0 192 94.3
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 8.4e-92 340.5 193 91.7
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 3.2e-91 338.6 192 93.2
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 4.6e-82 308.1 191 82.7
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 8.7e-81 303.9 198 81.8
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 1.5e-80 303.1 195 83.1
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 9.7e-80 300.4 192 82.8
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 1.4e-78 296.6 197 78.7
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 1.8e-78 296.2 194 82.0
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 1.8e-78 296.2 194 82.0
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 4.1e-78 295.0 193 78.8
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 2.0e-77 292.7 197 78.2
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 2.0e-77 292.7 195 80.5
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 5.9e-77 291.2 194 80.4
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 5.9e-77 291.2 196 79.6
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 1.7e-76 289.7 191 80.1
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 3.8e-76 288.5 192 78.1
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 5.0e-76 288.1 197 78.7
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 5.0e-76 288.1 193 77.7
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 8.5e-76 287.3 198 76.3
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 1.1e-75 287.0 198 76.8
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 3.2e-75 285.4 191 79.1
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 5.5e-75 284.6 198 76.3
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 1.2e-74 283.5 196 79.1
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 2.1e-74 282.7 198 74.7
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 2.1e-74 282.7 199 76.4
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 2.1e-74 282.7 193 77.2
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 3.6e-74 282.0 195 79.0
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 6.1e-74 281.2 198 73.7
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 7.9e-74 280.8 191 79.1
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 2.3e-73 279.3 194 79.4
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 2.3e-73 279.3 199 77.4
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 2.3e-73 279.3 199 77.4
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 3.0e-73 278.9 195 77.9
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.9e-73 278.5 195 77.9
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 5.1e-73 278.1 198 72.7
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 5.1e-73 278.1 162 90.1
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 6.7e-73 277.7 196 75.5
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 6.7e-73 277.7 196 75.5
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 6.7e-73 277.7 196 75.5
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 6.7e-73 277.7 196 75.5
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 6.7e-73 277.7 195 77.4
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 6.7e-73 277.7 191 77.0
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 8.8e-73 277.3 195 77.4
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 1.1e-72 276.9 195 77.4
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.1e-72 276.9 195 77.4
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 1.5e-72 276.6 186 77.4
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 2.0e-72 276.2 195 77.4
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.5e-72 275.8 193 75.6
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 2.5e-72 275.8 198 75.8
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.5e-72 275.8 195 76.9
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 2.5e-72 275.8 195 76.9
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 3.3e-72 275.4 196 75.0
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 3.3e-72 275.4 196 75.0
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 3.3e-72 275.4 198 72.2
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 4.3e-72 275.0 195 76.9
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 9.7e-72 273.9 177 80.8
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 9.7e-72 273.9 186 76.3
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 1.3e-71 273.5 197 74.1
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 1.7e-71 273.1 198 74.7
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 1.7e-71 273.1 193 75.1
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 2.2e-71 272.7 186 75.3
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 2.8e-71 272.3 198 75.8
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 2.8e-71 272.3 193 74.1
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 3.7e-71 271.9 198 74.7
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 4.8e-71 271.6 198 72.7
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 6.3e-71 271.2 193 74.1
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 8.2e-71 270.8 177 80.2
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 8.2e-71 270.8 193 74.1
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 1.4e-70 270.0 194 74.2
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 5.3e-70 268.1 197 72.6
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 5.3e-70 268.1 193 73.1
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 6.9e-70 267.7 197 72.1
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 6.9e-70 267.7 193 74.1
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 1.2e-69 266.9 165 81.8
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 2.6e-69 265.8 183 77.0
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 3.4e-69 265.4 197 73.1
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 4.5e-69 265.0 193 70.5
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 4.5e-69 265.0 190 72.6
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 7.7e-69 264.2 194 72.7
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 2.9e-68 262.3 211 68.7
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 3.8e-68 261.9 160 85.6
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 3.8e-68 261.9 191 74.3
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 6.5e-68 261.2 191 73.3
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 6.5e-68 261.2 148 90.5
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 1.1e-67 260.4 200 71.5
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 1.1e-67 260.4 191 73.3
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 3.2e-67 258.8 192 69.3
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 4.2e-67 258.5 191 72.3
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 1.6e-66 256.5 204 70.6
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 1.6e-66 256.5 201 70.6
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 4.7e-66 255.0 191 72.8
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 7.9e-66 254.2 192 71.9
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 2.6e-64 249.2 148 87.2
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 2.2e-63 246.1 190 72.1
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 1.5e-59 233.4 195 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 5.2e-49 198.4 156 62.2
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 2.6e-48 196.1 201 53.7
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 5.0e-44 181.8 140 70.7
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 8.5e-44 181.0 105 89.5
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.7e-42 176.0 168 53.0
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 4.7e-42 175.3 201 48.8
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 6.1e-42 174.9 156 57.1
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 6.1e-42 174.9 156 57.1
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 3.0e-41 172.6 157 54.8
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 2.6e-40 169.5 159 53.5
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 2.8e-39 166.0 103 84.5
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 6.3e-39 164.9 94 92.6
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 4.5e-37 158.7 102 82.4
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 6.6e-36 154.8 103 80.6
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 8.9e-33 144.4 124 66.9
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 7.0e-30 134.8 90 80.0
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.5e-27 127.1 86 73.3
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 6.8e-25 118.2 90 70.0
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 3.4e-24 115.9 71 83.1
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 2.7e-21 106.3 148 40.5
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 5.0e-20 102.1 193 35.2
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 3.3e-19 99.4 91 60.4
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 2.1e-18 96.7 88 62.5
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 6.8e-17 91.7 159 32.7
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 6.4e-15 85.1 72 58.3
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 1.5e-11 73.9 156 32.7
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.5e-11 73.9 43 81.4
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 6.2e-10 68.6 44 70.5
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 6.2e-10 68.6 92 40.2
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 4.9e-07 58.9 103 42.7
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 7.1e-06 55.1 161 30.4


User provided reference genes

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