Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 2.1e-32 141.7 70 100.0
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 8.2e-29 129.8 70 90.0
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 3.1e-28 127.9 71 85.9
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 6.9e-28 126.7 70 90.0
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 6.9e-28 126.7 70 90.0
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 1.2e-27 125.9 70 82.9
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 1.2e-27 125.9 70 82.9
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 1.2e-27 125.9 70 88.6
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 1.2e-27 125.9 70 88.6
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.5e-27 125.6 70 81.4
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 1.5e-27 125.6 71 87.3
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 1.5e-27 125.6 70 82.9
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 2.0e-27 125.2 70 85.7
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 2.0e-27 125.2 70 88.6
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 2.6e-27 124.8 70 82.9
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 2.6e-27 124.8 68 80.9
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 4.5e-27 124.0 71 83.1
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 5.9e-27 123.6 70 80.0
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 7.7e-27 123.2 70 81.4
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 7.7e-27 123.2 70 84.3
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 7.7e-27 123.2 72 81.9
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 7.7e-27 123.2 70 81.4
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 1.3e-26 122.5 70 81.4
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 1.3e-26 122.5 70 80.0
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 1.3e-26 122.5 72 83.3
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 1.3e-26 122.5 73 82.2
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 1.7e-26 122.1 70 80.0
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 1.7e-26 122.1 72 83.3
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 80.0
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 2.2e-26 121.7 72 83.3
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 2.9e-26 121.3 73 80.8
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 3.8e-26 120.9 70 78.6
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 3.8e-26 120.9 70 81.4
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 5.0e-26 120.6 70 80.0
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 5.0e-26 120.6 70 80.0
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 5.0e-26 120.6 72 80.6
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 6.5e-26 120.2 72 81.9
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 6.5e-26 120.2 71 81.7
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 6.5e-26 120.2 69 84.1
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 6.5e-26 120.2 70 80.0
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 6.5e-26 120.2 73 80.8
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 6.5e-26 120.2 73 79.5
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 6.5e-26 120.2 73 79.5
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 6.5e-26 120.2 73 79.5
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 8.5e-26 119.8 72 84.7
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 8.5e-26 119.8 72 81.9
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 8.5e-26 119.8 73 80.8
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 8.5e-26 119.8 71 83.1
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 8.5e-26 119.8 70 80.0
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.1e-25 119.4 73 80.8
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.1e-25 119.4 73 80.8
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 1.4e-25 119.0 72 81.9
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.4e-25 119.0 69 81.2
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.4e-25 119.0 70 80.0
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 1.4e-25 119.0 69 78.3
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.9e-25 118.6 72 79.2
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.9e-25 118.6 73 79.5
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 81.7
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 2.5e-25 118.2 69 78.3
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 2.5e-25 118.2 70 80.0
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 2.5e-25 118.2 70 80.0
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 3.2e-25 117.9 70 78.6
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 4.2e-25 117.5 70 75.7
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 4.2e-25 117.5 73 76.7
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 4.2e-25 117.5 70 77.1
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 5.5e-25 117.1 71 80.3
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 7.2e-25 116.7 72 77.8
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 7.2e-25 116.7 70 75.7
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 9.4e-25 116.3 64 87.5
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 1.6e-24 115.5 70 78.6
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.1e-24 115.2 73 76.7
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 2.1e-24 115.2 72 79.2
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 2.7e-24 114.8 74 78.4
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 3.6e-24 114.4 72 77.8
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 3.6e-24 114.4 71 78.9
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 6.1e-24 113.6 73 76.7
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.8e-23 112.1 69 75.4
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 5.1e-23 110.5 73 74.0
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 6.7e-23 110.2 73 74.0
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 2.0e-22 108.6 70 70.0
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 2.6e-22 108.2 62 80.6
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 7.4e-22 106.7 69 76.8
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 7.4e-22 106.7 71 71.8
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 1.7e-21 105.5 69 73.9
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.7e-21 105.5 62 79.0
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.7e-21 105.5 62 79.0
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 2.2e-21 105.1 81 60.5
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 3.7e-21 104.4 68 72.1
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 6.3e-21 103.6 61 77.0
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 1.8e-20 102.1 64 76.6
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 2.4e-20 101.7 64 78.1
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 4.1e-20 100.9 63 74.6
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 6.9e-20 100.1 64 75.0
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 5.9e-19 97.1 64 73.4
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 5.0e-18 94.0 63 71.4
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 7.2e-17 90.1 59 69.5
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 3.3e-14 81.3 50 80.0
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 7.4e-14 80.1 65 66.2
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 3.7e-13 77.8 59 64.4
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 1.3e-10 69.3 42 76.2
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 9.4e-09 63.2 56 57.1


User provided reference genes

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