Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G289700 Theobroma cacao HOM05D002310 ORTHO05D002326 0.0e+00 1552.3 833 100.0
Duzib168G1650 Durio zibethinus HOM05D002310 ORTHO05D002326 2.5e-233 812.8 823 59.8
Gorai.001G120400 Gossypium raimondii HOM05D002310 ORTHO05D002326 6.7e-186 655.2 842 50.7
COL.COLO4_19955 Corchorus olitorius HOM05D002310 ORTHO05D002326 5.5e-180 635.6 859 49.4
Gohir.D07G112001 Gossypium hirsutum HOM05D002310 ORTHO05D002326 1.5e-166 590.9 836 47.6
Gohir.A07G108250 Gossypium hirsutum HOM05D002310 ORTHO05D002326 1.1e-74 285.8 397 50.1
Atru.chr3.3356 Acer truncatum HOM05D002310 ORTHO05D002326 7.2e-15 87.0 217 31.3
CSS0005169 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 7.2e-15 87.0 131 37.4
PGR102G1882 Punica granatum HOM05D002310 ORTHO05D002326 9.5e-15 86.7 171 32.7
GSVIVG01031382001 Vitis vinifera HOM05D002310 ORTHO05D002326 1.0e-13 83.2 88 46.6
CSS0033098 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 1.8e-13 82.4 439 23.7
Rhsim13G0106900 Rhododendron simsii HOM05D002310 ORTHO05D002326 1.8e-13 82.4 89 47.2
Hma1.2p1_0246F.1_g101720 Hydrangea macrophylla HOM05D002310 ORTHO05D002326 6.8e-13 80.5 96 43.8
MELO3C019889.2 Cucumis melo HOM05D002310 ORTHO05D002326 1.2e-12 79.7 274 24.8
Dinv42583 Davidia involucrata HOM05D002310 ORTHO05D002326 1.2e-12 79.7 412 23.3
Manes.11G158900 Manihot esculenta HOM05D002310 ORTHO05D002326 1.5e-12 79.3 306 32.0
Actinidia18583 Actinidia chinensis HOM05D002310 ORTHO05D002326 2.6e-12 78.6 91 46.2
Nn6g35014 Nelumbo nucifera HOM05D002310 ORTHO05D002326 2.6e-12 78.6 128 37.5
Actinidia07217 Actinidia chinensis HOM05D002310 ORTHO05D002326 4.4e-12 77.8 89 44.9
Potri.009G147201 Populus trichocarpa HOM05D002310 ORTHO05D002326 7.5e-12 77.0 331 30.2
SGA_v2.0_scaffold147G36352 Striga asiatica HOM05D002310 ORTHO05D002326 9.8e-12 76.6 188 35.1
Actinidia24186 Actinidia chinensis HOM05D002310 ORTHO05D002326 2.8e-11 75.1 86 43.0
Lj2A990G28 Lonicera japonica HOM05D002310 ORTHO05D002326 3.7e-11 74.7 51 64.7
Lalb_Chr14g0374171 Lupinus albus HOM05D002310 ORTHO05D002326 4.9e-11 74.3 90 43.3
TAR633G0746 Trochodendron aralioides HOM05D002310 ORTHO05D002326 6.3e-11 73.9 84 46.4
ATR0820G154 Amborella trichopoda HOM05D002310 ORTHO05D002326 8.3e-11 73.6 105 41.0
CsaV3_6G004130 Cucumis sativus L. HOM05D002310 ORTHO05D002326 1.1e-10 73.2 51 60.8
Duzib114G0931 Durio zibethinus HOM05D002310 ORTHO05D002326 1.1e-10 73.2 89 43.8
Duzib106G1173 Durio zibethinus HOM05D002310 ORTHO05D002326 1.8e-10 72.4 89 42.7
Dinv20806 Davidia involucrata HOM05D002310 ORTHO05D002326 2.4e-10 72.0 53 60.4
CAN.G644.19 Capsicum annuum HOM05D002310 ORTHO05D002326 3.1e-10 71.6 85 47.1
Thecc.10G104000 Theobroma cacao HOM05D002310 ORTHO05D002326 3.1e-10 71.6 89 43.8
MD02G1254600 Malus domestica HOM05D002310 ORTHO05D002326 5.4e-10 70.9 88 47.7
Gohir.A05G395100 Gossypium hirsutum HOM05D002310 ORTHO05D002326 7.0e-10 70.5 89 41.6
Prupe.2G084400 Prunus persica HOM05D002310 ORTHO05D002326 1.2e-09 69.7 88 46.6
SalBow6G0002 Salvia bowleyana HOM05D002310 ORTHO05D002326 1.2e-09 69.7 58 55.2
Gohir.D04G019900 Gossypium hirsutum HOM05D002310 ORTHO05D002326 1.6e-09 69.3 89 40.4
Gorai.012G023700 Gossypium raimondii HOM05D002310 ORTHO05D002326 1.6e-09 69.3 89 40.4
CANSAT54G1082 Cannabis sativa HOM05D002310 ORTHO05D002326 2.0e-09 68.9 89 39.3
CANSAT54G1757 Cannabis sativa HOM05D002310 ORTHO05D002326 2.0e-09 68.9 89 39.3
COL.COLO4_20106 Corchorus olitorius HOM05D002310 ORTHO05D002326 2.0e-09 68.9 85 41.2
DCAR_012177 Daucus carota HOM05D002310 ORTHO05D002326 2.0e-09 68.9 94 40.4
Nitab4.5_0004070g0010 Nicotiana tabacum HOM05D002310 ORTHO05D002326 2.0e-09 68.9 52 61.5
Nitab4.5_0006089g0010 Nicotiana tabacum HOM05D002310 ORTHO05D002326 2.0e-09 68.9 94 42.6
ClCG02G021960 Citrullus lanatus HOM05D002310 ORTHO05D002326 3.5e-09 68.2 80 47.5
Eucgr.B03884 Eucalyptus grandis HOM05D002310 ORTHO05D002326 3.5e-09 68.2 326 26.1
RcHm_v2.0_Chr1g0332961 Rosa chinensis HOM05D002310 ORTHO05D002326 3.5e-09 68.2 87 43.7
PGSC0003DMG400026527 Solanum tuberosum HOM05D002310 ORTHO05D002326 3.5e-09 68.2 52 59.6
vmacro07230 Vaccinium macrocarpon HOM05D002310 ORTHO05D002326 3.5e-09 68.2 62 51.6
Lj2C29T14 Lonicera japonica HOM05D002310 ORTHO05D002326 4.5e-09 67.8 52 53.8
Ah.04g163710 Amaranthus hybridus HOM05D002310 ORTHO05D002326 5.9e-09 67.4 89 41.6
Aqoxy2G01357 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 5.9e-09 67.4 90 37.8
ClCG08G008160 Citrullus lanatus HOM05D002310 ORTHO05D002326 5.9e-09 67.4 296 25.0
Zm00001eb138970 Zea mays HOM05D002310 ORTHO05D002326 5.9e-09 67.4 53 56.6
CiPaw.13G037400 Carya illinoinensis HOM05D002310 ORTHO05D002326 7.8e-09 67.0 195 29.7
FAN25G2392 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.0e-08 66.6 68 52.9
Cpa.g.sc19.12 Carica papaya HOM05D002310 ORTHO05D002326 1.3e-08 66.2 83 47.0
CiPaw.14G029600 Carya illinoinensis HOM05D002310 ORTHO05D002326 1.3e-08 66.2 50 56.0
SEGI_33353 Sequoiadendron giganteum HOM05D002310 ORTHO05D002326 1.3e-08 66.2 87 42.5
Ciclev10030758m.g Citrus clementina HOM05D002310 ORTHO05D002326 1.7e-08 65.9 87 39.1
FvH4_7g05850 Fragaria vesca HOM05D002310 ORTHO05D002326 1.7e-08 65.9 87 41.4
FAN01G2365 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.7e-08 65.9 87 41.4
FAN06G0045 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.7e-08 65.9 87 41.4
Potri.008G024500 Populus trichocarpa HOM05D002310 ORTHO05D002326 1.7e-08 65.9 85 41.2
CANSAT56G1674 Cannabis sativa HOM05D002310 ORTHO05D002326 2.3e-08 65.5 51 56.9
Oeu059860.1 Olea europaea HOM05D002310 ORTHO05D002326 2.3e-08 65.5 93 38.7
Sabra10G0182800 Salix brachista HOM05D002310 ORTHO05D002326 2.3e-08 65.5 85 41.2
ECA233G1823 Erigeron canadensis HOM05D002310 ORTHO05D002326 2.9e-08 65.1 63 46.0
FAN03G0072 Fragaria x ananassa HOM05D002310 ORTHO05D002326 2.9e-08 65.1 87 41.4
Sed0017107 Sechium edule HOM05D002310 ORTHO05D002326 2.9e-08 65.1 211 27.5
Lsat_1_v5_gn_8_24480 Lactuca sativa HOM05D002310 ORTHO05D002326 3.9e-08 64.7 52 53.8
RcHm_v2.0_Chr5g0055031 Rosa chinensis HOM05D002310 ORTHO05D002326 3.9e-08 64.7 59 57.6
AUR62036362 Chenopodium quinoa HOM05D002310 ORTHO05D002326 5.0e-08 64.3 90 37.8
Haze_02585 Corylus avellana HOM05D002310 ORTHO05D002326 5.0e-08 64.3 199 29.1
Migut.D02361 Erythranthe guttata HOM05D002310 ORTHO05D002326 5.0e-08 64.3 55 50.9
Solyc11g066990.2 Solanum lycopersicum HOM05D002310 ORTHO05D002326 5.0e-08 64.3 52 55.8
Sopen11g026700 Solanum pennellii HOM05D002310 ORTHO05D002326 5.0e-08 64.3 52 55.8
TWI79G0679 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 5.0e-08 64.3 249 26.5
MD07G1067200 Malus domestica HOM05D002310 ORTHO05D002326 6.6e-08 63.9 252 27.0
arahy.Tifrunner.gnm1.ann1.WY8BRN Arachis hypogaea HOM05D002310 ORTHO05D002326 8.6e-08 63.5 51 56.9
arahy.Tifrunner.gnm1.ann1.Y62G5D Arachis hypogaea HOM05D002310 ORTHO05D002326 8.6e-08 63.5 51 56.9
Cpa.g.sc509.3 Carica papaya HOM05D002310 ORTHO05D002326 8.6e-08 63.5 220 27.3
CDE06G0922 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 8.6e-08 63.5 67 41.8
HanXRQChr08g0217861 Helianthus annuus HOM05D002310 ORTHO05D002326 8.6e-08 63.5 72 41.7
QL04p042592 Quercus lobata HOM05D002310 ORTHO05D002326 8.6e-08 63.5 203 28.6
arahy.Tifrunner.gnm1.ann1.CLV3JT Arachis hypogaea HOM05D002310 ORTHO05D002326 1.1e-07 63.2 45 57.8
DCAR_006351 Daucus carota HOM05D002310 ORTHO05D002326 1.5e-07 62.8 52 53.8
FAN16G2766 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.5e-07 62.8 67 52.2
Sabra08G0016500 Salix brachista HOM05D002310 ORTHO05D002326 1.5e-07 62.8 90 41.1
TWI38G0268 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 1.5e-07 62.8 85 42.4
Potri.010G235700 Populus trichocarpa HOM05D002310 ORTHO05D002326 1.9e-07 62.4 85 40.0
Sc09g0005520 Simmondsia chinensis HOM05D002310 ORTHO05D002326 1.9e-07 62.4 92 40.2
FvH4_3g29670 Fragaria vesca HOM05D002310 ORTHO05D002326 2.5e-07 62.0 67 50.7
Rhsim03G0104900 Rhododendron simsii HOM05D002310 ORTHO05D002326 2.5e-07 62.0 223 26.5
AUR62030725 Chenopodium quinoa HOM05D002310 ORTHO05D002326 3.3e-07 61.6 89 38.2
TWI15G0532 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 3.3e-07 61.6 50 54.0
Cfa011244 Carpinus fangiana HOM05D002310 ORTHO05D002326 4.3e-07 61.2 200 29.0
MELO3C021446.2 Cucumis melo HOM05D002310 ORTHO05D002326 4.3e-07 61.2 85 42.4
FAN10G0348 Fragaria x ananassa HOM05D002310 ORTHO05D002326 4.3e-07 61.2 87 39.1
FAN11G0858 Fragaria x ananassa HOM05D002310 ORTHO05D002326 5.6e-07 60.8 55 52.7
Dinv01755 Davidia involucrata HOM05D002310 ORTHO05D002326 7.3e-07 60.5 52 55.8
Dinv06794 Davidia involucrata HOM05D002310 ORTHO05D002326 7.3e-07 60.5 52 55.8
Migut.O00646 Erythranthe guttata HOM05D002310 ORTHO05D002326 7.3e-07 60.5 55 49.1
AUR62043074 Chenopodium quinoa HOM05D002310 ORTHO05D002326 9.5e-07 60.1 89 34.8
AUR62039251 Chenopodium quinoa HOM05D002310 ORTHO05D002326 2.8e-06 58.5 89 33.7
Manes.10G057200 Manihot esculenta HOM05D002310 ORTHO05D002326 3.6e-06 58.2 84 40.5
Atru.chr12.977 Acer truncatum HOM05D002310 ORTHO05D002326 4.7e-06 57.8 85 36.5
Cc01_g09630 Coffea canephora HOM05D002310 ORTHO05D002326 6.1e-06 57.4 43 58.1
Lj5g0012410 Lotus japonicus HOM05D002310 ORTHO05D002326 6.1e-06 57.4 50 50.0
PSO384G5061 Papaver somniferum HOM05D002310 ORTHO05D002326 8.0e-06 57.0 51 51.0
PSO443G0025 Papaver somniferum HOM05D002310 ORTHO05D002326 8.0e-06 57.0 51 51.0


User provided reference genes

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