Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 5.0e-31 137.1 68 100.0
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 9.4e-30 132.9 68 92.6
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 2.1e-29 131.7 68 92.6
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 1.4e-28 129.0 68 91.2
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 1.8e-28 128.6 68 89.7
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 1.8e-28 128.6 68 89.7
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 3.0e-28 127.9 68 89.7
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 3.0e-28 127.9 68 89.7
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 2.0e-27 125.2 68 88.2
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 9.7e-27 122.9 68 86.8
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 9.7e-27 122.9 68 88.2
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 1.3e-26 122.5 68 86.8
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.7e-26 122.1 66 90.9
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 1.7e-26 122.1 68 85.3
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 2.2e-26 121.7 68 88.2
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.2e-26 121.7 68 85.3
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.2e-26 121.7 68 88.2
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.2e-26 121.7 68 88.2
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 2.2e-26 121.7 68 86.8
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 2.2e-26 121.7 68 85.3
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 2.8e-26 121.3 68 83.8
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.7e-26 120.9 68 88.2
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.7e-26 120.9 68 86.8
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.7e-26 120.9 68 86.8
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 3.7e-26 120.9 68 86.8
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 4.8e-26 120.6 66 87.9
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 4.8e-26 120.6 68 85.3
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 4.8e-26 120.6 68 85.3
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 4.8e-26 120.6 68 85.3
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 4.8e-26 120.6 68 88.2
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 4.8e-26 120.6 68 85.3
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 4.8e-26 120.6 68 85.3
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 6.3e-26 120.2 67 88.1
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 6.3e-26 120.2 68 85.3
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 6.3e-26 120.2 68 85.3
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 6.3e-26 120.2 66 87.9
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 6.3e-26 120.2 68 85.3
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 8.2e-26 119.8 68 86.8
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 1.1e-25 119.4 68 86.8
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 1.4e-25 119.0 67 82.1
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.4e-25 119.0 68 86.8
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.4e-25 119.0 68 83.8
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.8e-25 118.6 68 83.8
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 1.8e-25 118.6 68 83.8
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 3.1e-25 117.9 66 84.8
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 3.1e-25 117.9 66 86.4
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 3.1e-25 117.9 68 85.3
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 3.1e-25 117.9 67 85.1
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 5.3e-25 117.1 67 86.6
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 5.3e-25 117.1 66 86.4
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 7.0e-25 116.7 67 80.6
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 7.0e-25 116.7 68 80.9
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 7.0e-25 116.7 68 80.9
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 1.2e-24 115.9 68 82.4
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 1.2e-24 115.9 67 83.6
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 1.2e-24 115.9 68 83.8
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.6e-24 115.5 66 81.8
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.6e-24 115.5 66 81.8
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.6e-24 115.5 68 82.4
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.6e-24 115.5 67 82.1
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 2.0e-24 115.2 68 82.4
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 2.0e-24 115.2 68 79.4
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 2.0e-24 115.2 67 80.6
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 2.6e-24 114.8 68 82.4
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 2.6e-24 114.8 68 82.4
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.6e-24 114.8 68 83.8
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 2.6e-24 114.8 68 82.4
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 2.6e-24 114.8 67 79.1
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 2.6e-24 114.8 67 80.6
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 3.5e-24 114.4 65 80.0
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 3.5e-24 114.4 68 80.9
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 3.5e-24 114.4 66 81.8
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 3.5e-24 114.4 66 80.3
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 79.4
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 80.9
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 4.5e-24 114.0 68 83.8
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 4.5e-24 114.0 67 79.1
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 5.9e-24 113.6 68 80.9
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 5.9e-24 113.6 67 80.6
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 5.9e-24 113.6 66 81.8
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 7.7e-24 113.2 68 80.9
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.7e-24 113.2 68 82.4
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.7e-24 113.2 68 82.4
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 7.7e-24 113.2 68 82.4
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 7.7e-24 113.2 66 81.8
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 7.7e-24 113.2 68 79.4
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 1.0e-23 112.8 68 79.4
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 1.0e-23 112.8 68 79.4
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.0e-23 112.8 68 79.4
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 1.0e-23 112.8 66 80.3
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.3e-23 112.5 66 81.8
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 1.3e-23 112.5 68 77.9
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 1.3e-23 112.5 68 80.9
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-23 112.5 68 80.9
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 1.3e-23 112.5 68 80.9
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 1.3e-23 112.5 67 77.6
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 1.3e-23 112.5 67 77.6
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 1.3e-23 112.5 66 81.8
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 1.7e-23 112.1 68 80.9
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 1.7e-23 112.1 68 79.4
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 2.2e-23 111.7 68 79.4
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 2.2e-23 111.7 67 80.6
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 2.2e-23 111.7 67 76.1
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 2.2e-23 111.7 68 77.9
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.9e-23 111.3 68 80.9
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.9e-23 111.3 66 80.3
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 3.8e-23 110.9 67 80.6
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 6.5e-23 110.2 66 77.3
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.5e-23 110.2 68 77.9
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.5e-23 110.2 66 78.8
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 6.5e-23 110.2 66 78.8
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 8.5e-23 109.8 66 75.8
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 8.5e-23 109.8 68 77.9
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 8.5e-23 109.8 68 77.9
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 8.5e-23 109.8 68 76.5
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 8.5e-23 109.8 68 80.9
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 8.5e-23 109.8 68 77.9
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 1.1e-22 109.4 66 78.8
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.1e-22 109.4 66 77.3
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 1.1e-22 109.4 68 75.0
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 1.5e-22 109.0 67 74.6
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 1.5e-22 109.0 68 79.4
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 1.9e-22 108.6 67 76.1
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.9e-22 108.6 68 82.4
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 1.9e-22 108.6 66 77.3
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 7.2e-22 106.7 68 76.5
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 7.2e-22 106.7 64 78.1
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 9.4e-22 106.3 66 78.8
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 9.4e-22 106.3 66 78.8
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.2e-21 105.9 68 75.0
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.2e-21 105.9 68 70.6
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 2.1e-21 105.1 68 70.6
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.1e-21 105.1 64 76.6
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 2.7e-21 104.8 68 72.1
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 2.7e-21 104.8 68 70.6
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 8.0e-21 103.2 62 79.0
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.0e-20 102.8 68 72.1
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 2.3e-20 101.7 68 72.1
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 2.3e-20 101.7 68 70.6
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 2.0e-19 98.6 68 73.5
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 3.4e-19 97.8 52 94.2
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 3.4e-19 97.8 67 73.1
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 6.3e-18 93.6 49 89.8
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 7.0e-17 90.1 50 84.0
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 3.5e-16 87.8 50 84.0
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 5.9e-16 87.0 61 73.8
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 1.3e-15 85.9 52 80.8
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 2.2e-15 85.1 68 67.6
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 2.2e-15 85.1 52 78.8
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 6.5e-15 83.6 51 80.4
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 8.5e-15 83.2 52 76.9
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 1.5e-14 82.4 52 75.0
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 2.7e-13 78.2 50 74.0
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 3.6e-13 77.8 50 78.0
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 8.0e-13 76.6 52 71.2
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 2.3e-12 75.1 59 57.6
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 2.3e-12 75.1 51 74.5
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 3.4e-11 71.2 51 66.7
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 9.8e-11 69.7 47 74.5
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 2.8e-10 68.2 51 72.5
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 3.7e-10 67.8 56 57.1
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 3.1e-09 64.7 59 57.6
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 4.5e-08 60.8 36 77.8
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 4.5e-08 60.8 36 77.8
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 4.5e-08 60.8 36 77.8
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 1.3e-07 59.3 35 77.1
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 1.3e-07 59.3 36 75.0
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 8.6e-07 56.6 61 47.5
BcaC04g21006 Brassica carinata HOM05D001074 ORTHO05D001188 1.1e-06 56.2 36 72.2
C09p36720 Brassica napus HOM05D001074 ORTHO05D001188 1.1e-06 56.2 36 72.2
BolC9t56503H Brassica oleracea HOM05D001074 ORTHO05D001188 1.1e-06 56.2 36 72.2


User provided reference genes

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