Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 3.4e-62 241.9 162 100.0
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 7.6e-54 214.2 127 88.2
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.9e-52 209.5 126 87.3
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 1.8e-50 203.0 115 90.4
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 6.3e-48 194.5 108 91.7
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 3.4e-46 188.7 126 78.6
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 3.8e-45 185.3 124 78.2
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 3.8e-45 185.3 124 78.2
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 1.9e-44 183.0 127 78.0
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 7.2e-44 181.0 128 74.2
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 1.6e-43 179.9 127 74.0
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 2.1e-43 179.5 128 74.2
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 3.6e-43 178.7 124 76.6
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 3.6e-43 178.7 123 75.6
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 1.8e-42 176.4 124 79.0
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 1.8e-42 176.4 126 75.4
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 1.8e-42 176.4 117 79.5
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 3.9e-42 175.3 111 79.3
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 5.1e-42 174.9 123 77.2
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 1.1e-41 173.7 119 78.2
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 3.3e-41 172.2 117 76.9
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 9.7e-41 170.6 129 74.4
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 2.2e-40 169.5 121 76.0
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 2.8e-40 169.1 127 73.2
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 4.8e-40 168.3 132 71.2
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 1.1e-39 167.2 132 66.7
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 1.1e-39 167.2 123 74.8
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 1.8e-39 166.4 123 74.8
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 1.8e-39 166.4 126 72.2
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 2.4e-39 166.0 118 77.1
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 3.1e-39 165.6 108 75.9
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 4.1e-39 165.2 108 75.9
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 5.3e-39 164.9 141 68.1
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 1.2e-38 163.7 121 73.6
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 1.5e-38 163.3 123 74.8
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 1.5e-38 163.3 120 71.7
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 1.5e-38 163.3 106 74.5
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 2.0e-38 162.9 123 70.7
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 2.0e-38 162.9 123 70.7
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.0e-38 162.9 119 73.1
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 2.0e-38 162.9 115 73.0
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 2.6e-38 162.5 104 76.9
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 3.4e-38 162.2 103 77.7
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 3.4e-38 162.2 103 77.7
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 3.4e-38 162.2 103 77.7
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 3.4e-38 162.2 130 71.5
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 3.4e-38 162.2 121 72.7
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 4.5e-38 161.8 123 69.9
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 7.7e-38 161.0 121 71.9
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 7.7e-38 161.0 123 73.2
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 1.0e-37 160.6 126 67.5
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 1.0e-37 160.6 118 70.3
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 1.3e-37 160.2 109 70.6
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 1.7e-37 159.8 105 72.4
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 2.2e-37 159.5 111 75.7
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 2.2e-37 159.5 121 71.1
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 2.9e-37 159.1 95 83.2
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 3.8e-37 158.7 114 74.6
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 3.8e-37 158.7 114 76.3
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 3.8e-37 158.7 121 71.1
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 5.0e-37 158.3 108 69.4
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 5.0e-37 158.3 118 70.3
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 8.5e-37 157.5 118 70.3
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 1.1e-36 157.1 106 76.4
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.1e-36 157.1 135 65.9
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 1.9e-36 156.4 136 63.2
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 2.5e-36 156.0 138 60.9
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 3.2e-36 155.6 124 66.9
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 4.2e-36 155.2 122 68.0
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 9.4e-36 154.1 129 67.4
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 1.6e-35 153.3 122 72.1
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 2.1e-35 152.9 124 68.5
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 3.6e-35 152.1 140 60.7
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 4.7e-35 151.8 97 77.3
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 7.9e-35 151.0 121 71.1
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 1.4e-34 150.2 100 70.0
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 1.8e-34 149.8 118 66.9
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 6.7e-34 147.9 125 64.8
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 1.1e-33 147.1 100 69.0
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 2.0e-33 146.4 102 78.4
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 2.6e-33 146.0 126 65.1
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 4.4e-33 145.2 115 67.0
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 5.7e-33 144.8 119 61.3
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 5.7e-33 144.8 95 72.6
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 5.7e-33 144.8 107 72.9
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 2.2e-32 142.9 127 63.0
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 4.8e-32 141.7 123 63.4
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 8.2e-32 141.0 122 63.9
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 8.2e-32 141.0 119 66.4
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 1.4e-31 140.2 114 67.5
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 1.4e-31 140.2 148 57.4
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 3.1e-31 139.0 85 81.2
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 5.3e-31 138.3 134 55.2
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 5.3e-31 138.3 92 78.3
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 5.3e-31 138.3 91 74.7
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 5.3e-31 138.3 119 62.2
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 7.0e-31 137.9 85 78.8
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 7.0e-31 137.9 123 61.0
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 2.9e-29 132.5 126 56.3
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 3.8e-29 132.1 111 67.6
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 3.8e-29 132.1 98 72.4
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 4.7e-27 125.2 107 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 1.0e-26 124.0 131 53.4
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 5.2e-26 121.7 91 68.1
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 2.0e-25 119.8 104 59.6
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 9.7e-25 117.5 112 56.2
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 2.8e-24 115.9 119 52.9
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 5.3e-23 111.7 94 67.0
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 2.7e-19 99.4 107 49.5
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 3.0e-18 95.9 97 48.5
COL.COLO4_19857 Corchorus olitorius HOM05D006639 ORTHO05D008339 2.6e-17 92.8 58 86.2
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 2.2e-16 89.7 110 45.5
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.9e-12 76.6 59 69.5
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 4.2e-12 75.5 57 70.2
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.7e-11 72.8 57 68.4
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.7e-11 72.8 57 68.4
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.7e-11 72.8 57 68.4
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 1.3e-08 63.9 53 64.2
Lsat_1_v5_gn_6_29620 Lactuca sativa HOM05D000297 ORTHO05D000193 1.1e-07 60.8 90 34.4
AUR62009752 Chenopodium quinoa HOM05D006639 ORTHO05D008339 2.4e-07 59.7 48 60.4
Lalb_Chr03g0028111 Lupinus albus HOM05D006639 ORTHO05D008339 5.4e-07 58.5 39 74.4
CANSAT11G2562 Cannabis sativa HOM05D000297 ORTHO05D000193 4.5e-06 55.5 104 32.7
Sc02g0002040 Simmondsia chinensis HOM05D000297 ORTHO05D000193 4.5e-06 55.5 107 30.8
ATR0827G083 Amborella trichopoda HOM05D000297 ORTHO05D000193 5.9e-06 55.1 104 32.7
CANSAT56G4001 Cannabis sativa HOM05D000297 ORTHO05D000193 5.9e-06 55.1 100 33.0
Ca_06394_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 5.9e-06 55.1 105 32.4
Duzib106G0738 Durio zibethinus HOM05D000297 ORTHO05D000193 5.9e-06 55.1 99 31.3
SGA_v2.0_scaffold70G23513 Striga asiatica HOM05D000297 ORTHO05D000193 5.9e-06 55.1 106 33.0
CAN.G337.3 Capsicum annuum HOM05D000297 ORTHO05D000193 7.7e-06 54.7 104 33.7
Cre02.g079200 Chlamydomonas reinhardtii HOM05D000297 ORTHO05D000193 7.7e-06 54.7 103 32.0
FvH4_3g29360 Fragaria vesca HOM05D000297 ORTHO05D000193 7.7e-06 54.7 104 31.7
FAN11G1502 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.7e-06 54.7 104 31.7
FAN21G0154 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.7e-06 54.7 104 31.7
FAN25G0374 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.7e-06 54.7 104 31.7
MD11G1200400 Malus domestica HOM05D000297 ORTHO05D000193 7.7e-06 54.7 104 31.7
Nn135s43805 Nelumbo nucifera HOM05D066312 ORTHO05D008339 7.7e-06 54.7 52 61.5
RcHm_v2.0_Chr3g0468661 Rosa chinensis HOM05D000297 ORTHO05D000193 7.7e-06 54.7 111 30.6
RcHm_v2.0_Chr5g0053731 Rosa chinensis HOM05D000297 ORTHO05D000193 7.7e-06 54.7 104 31.7
vmacro12081 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 7.7e-06 54.7 98 32.7


User provided reference genes

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