Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 1.8e-140 502.7 272 100.0
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.1e-100 368.6 261 74.7
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 5.3e-100 368.2 262 75.2
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.5e-99 366.7 261 74.3
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.0e-99 366.3 262 74.0
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 1.3e-93 347.1 261 70.1
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.0e-90 337.4 251 73.3
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 5.0e-90 335.1 253 73.9
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 1.9e-89 333.2 261 72.0
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.5e-81 306.2 197 79.2
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 1.4e-63 247.3 256 57.4
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 8.9e-63 244.6 245 56.7
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.0e-62 243.4 244 56.6
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 2.6e-62 243.0 240 55.0
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.4e-62 242.7 244 54.9
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.4e-62 242.7 244 54.9
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 3.4e-62 242.7 238 58.8
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.4e-62 242.3 244 55.3
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 9.8e-62 241.1 235 58.3
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 1.3e-61 240.7 244 54.5
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 2.4e-60 236.5 248 55.2
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 3.2e-60 236.1 266 54.9
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 7.0e-60 235.0 216 60.2
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 2.0e-59 233.4 201 63.2
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 2.7e-59 233.0 202 62.4
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 3.5e-59 232.6 250 52.8
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 4.6e-59 232.3 265 50.9
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 2.3e-58 229.9 231 55.0
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.5e-57 227.3 228 58.3
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 3.3e-57 226.1 255 53.7
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 2.1e-56 223.4 237 57.0
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 4.7e-56 222.2 209 56.0
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.7e-56 222.2 262 55.0
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 6.2e-56 221.9 242 51.7
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 1.0e-55 221.1 233 56.2
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 1.0e-55 221.1 196 59.2
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.8e-55 220.3 264 47.3
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 1.8e-55 220.3 248 51.2
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 8.9e-55 218.0 231 51.1
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 1.2e-54 217.6 225 56.0
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.5e-54 217.2 210 54.3
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 2.0e-54 216.9 190 62.1
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 5.8e-54 215.3 252 49.6
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 8.3e-53 211.5 243 54.3
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 1.1e-52 211.1 246 50.8
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 1.9e-52 210.3 243 53.9
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.9e-52 210.3 221 50.2
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 4.1e-52 209.1 189 61.4
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 5.4e-52 208.8 187 62.0
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.2e-51 207.6 190 56.3
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 2.0e-51 206.8 223 55.2
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 1.0e-50 204.5 241 52.3
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 1.7e-50 203.8 244 52.9
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 8.6e-50 201.4 183 60.7
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.1e-49 201.1 211 56.9
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 1.9e-49 200.3 241 50.2
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.5e-49 199.9 188 52.7
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 2.1e-48 196.8 245 48.6
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 2.8e-48 196.4 271 49.1
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 4.0e-47 192.6 197 57.4
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 8.9e-47 191.4 245 49.4
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 8.9e-47 191.4 224 48.7
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 8.9e-47 191.4 212 54.7
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 1.5e-46 190.7 208 53.8
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 2.6e-46 189.9 210 53.3
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 9.8e-46 188.0 221 51.1
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 1.3e-45 187.6 175 58.9
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 2.2e-45 186.8 201 54.7
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 2.9e-45 186.4 196 56.1
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 2.9e-45 186.4 216 50.0
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 4.9e-45 185.7 235 45.1
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 6.4e-45 185.3 231 48.1
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.1e-44 184.5 220 51.8
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 1.4e-44 184.1 215 50.2
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 7.1e-44 181.8 199 50.3
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 9.2e-44 181.4 225 52.9
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 2.1e-43 180.3 208 51.9
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 2.7e-43 179.9 196 49.0
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 4.6e-43 179.1 225 52.4
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 1.7e-42 177.2 227 52.0
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 1.7e-42 177.2 227 52.0
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 1.7e-42 177.2 227 52.0
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 5.1e-42 175.6 190 51.6
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 8.6e-42 174.9 229 49.3
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 2.1e-40 170.2 230 49.6
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 3.6e-40 169.5 223 44.8
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 6.2e-40 168.7 196 47.4
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 8.1e-40 168.3 96 82.3
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.1e-39 167.9 230 49.1
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 3.1e-39 166.4 185 51.9
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 5.2e-39 165.6 175 52.6
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.2e-38 164.5 208 44.2
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 2.6e-38 163.3 175 49.7
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.6e-38 163.3 206 50.5
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 4.4e-38 162.5 200 49.5
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 5.8e-38 162.2 239 48.5
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 7.6e-38 161.8 169 56.8
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 4.9e-37 159.1 158 55.1
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 6.4e-37 158.7 207 48.3
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 6.4e-37 158.7 187 47.6
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 8.4e-37 158.3 186 48.9
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.9e-36 157.1 196 52.6
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 2.4e-36 156.8 193 47.2
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 5.4e-36 155.6 286 41.3
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 9.2e-36 154.8 105 70.5
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.6e-35 154.1 161 58.4
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 1.0e-34 151.4 219 43.8
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 2.3e-34 150.2 197 44.7
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 2.5e-33 146.7 220 41.4
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 7.3e-33 145.2 242 43.8
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 4.7e-32 142.5 189 49.2
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 6.2e-32 142.1 157 56.1
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 8.1e-32 141.7 212 41.0
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.1e-31 141.4 163 49.7
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 1.8e-31 140.6 180 48.9
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 1.3e-29 134.4 219 42.0
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 3.8e-29 132.9 195 45.6
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 1.9e-28 130.6 187 41.2
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 1.9e-28 130.6 168 48.8
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 2.4e-28 130.2 195 44.1
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 3.9e-26 122.9 136 54.4
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 5.1e-26 122.5 108 55.6
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 5.1e-26 122.5 188 44.1
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.5e-25 120.9 223 42.6
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 5.6e-25 119.0 175 42.9
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 9.6e-25 118.2 225 40.0
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 2.8e-24 116.7 197 42.1
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 2.8e-24 116.7 138 55.8
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 1.8e-23 114.0 154 50.6
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 3.1e-23 113.2 199 41.7
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 4.0e-23 112.8 188 43.6
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 5.3e-23 112.5 238 39.1
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 5.3e-23 112.5 175 40.6
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 9.0e-23 111.7 181 44.8
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 1.2e-22 111.3 153 51.0
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 5.8e-22 109.0 169 46.2
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 2.2e-21 107.1 186 48.4
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 6.4e-21 105.5 181 40.3
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 8.4e-21 105.1 244 40.2
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 8.4e-21 105.1 166 46.4
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 7.1e-20 102.1 174 39.1
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 1.6e-19 100.9 202 41.6
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 2.1e-19 100.5 164 45.1
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 2.7e-19 100.1 204 39.2
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 3.0e-18 96.7 174 42.0
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 5.1e-18 95.9 170 42.9
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.9e-17 94.0 66 62.1
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 1.9e-17 94.0 164 45.7
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 1.9e-17 94.0 82 51.2
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 4.3e-17 92.8 97 61.9
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 7.4e-17 92.0 89 51.7
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 6.9e-15 85.5 226 34.5
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 1.5e-14 84.3 89 50.6
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 1.5e-14 84.3 89 50.6
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 2.6e-14 83.6 99 47.5
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 4.9e-13 79.3 134 46.3
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 1.1e-12 78.2 79 49.4
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 2.7e-11 73.6 168 32.1
CARHR170000 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.4e-07 61.2 61 52.5


User provided reference genes

Program Settings