Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 6.0e-56 220.7 119 100.0
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.8e-45 185.3 119 83.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.8e-42 174.9 120 79.2
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.8e-42 174.9 120 79.2
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 6.4e-42 174.1 119 75.6
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 4.2e-41 171.4 121 77.7
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.1e-41 170.6 120 78.3
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 4.6e-40 167.9 119 75.6
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.6e-40 167.9 119 75.6
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.8e-39 166.0 119 74.8
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.5e-38 162.9 120 74.2
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 3.7e-37 158.3 119 70.6
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 4.8e-37 157.9 115 73.0
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-36 156.8 116 74.1
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.4e-36 156.4 119 73.9
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.4e-36 156.4 119 72.3
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.4e-36 156.4 120 75.0
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.4e-36 155.6 116 73.3
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 3.1e-36 155.2 119 71.4
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.1e-36 155.2 118 69.5
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 4.0e-36 154.8 115 72.2
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 9.0e-36 153.7 121 72.7
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 9.0e-36 153.7 121 71.1
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.6e-35 152.1 119 70.6
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 3.4e-35 151.8 119 71.4
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 4.5e-35 151.4 120 69.2
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.7e-34 149.4 120 71.7
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.2e-34 149.1 120 73.3
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 3.8e-34 148.3 116 72.4
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 6.5e-34 147.5 120 70.8
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.1e-33 146.7 112 71.4
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 3.2e-33 145.2 122 71.3
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 4.2e-33 144.8 120 70.0
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 65.3
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.2e-32 143.3 122 66.4
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 70.2
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 71.9
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.6e-32 142.9 121 70.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.1e-32 142.5 120 68.3
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 2.1e-32 142.5 120 69.2
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 2.7e-32 142.1 120 68.3
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.7e-32 142.1 127 65.4
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.7e-32 142.1 120 69.2
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.5e-32 141.7 120 70.0
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 4.6e-32 141.4 121 71.1
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 4.6e-32 141.4 121 71.1
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 4.6e-32 141.4 120 67.5
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 4.6e-32 141.4 121 71.1
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 6.0e-32 141.0 120 68.3
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.0e-32 141.0 122 67.2
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 7.9e-32 140.6 117 65.0
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 68.3
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.0e-31 140.2 121 66.9
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 65.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.3e-31 139.8 121 66.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-31 139.8 122 66.4
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.8e-31 139.4 122 65.6
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 1.8e-31 139.4 120 67.5
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.3e-31 139.0 120 66.7
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 3.0e-31 138.7 121 70.2
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.9e-31 138.3 124 69.4
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.7e-31 137.5 120 65.0
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 8.7e-31 137.1 128 62.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.1e-30 136.7 117 65.0
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.5e-30 136.3 120 65.0
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.5e-30 136.3 120 64.2
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.5e-30 136.3 120 64.2
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.9e-30 136.0 121 65.3
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 3.3e-30 135.2 120 64.2
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 5.7e-30 134.4 120 65.8
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 7.4e-30 134.0 115 65.2
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 9.6e-30 133.7 113 69.0
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.3e-29 133.3 105 68.6
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.3e-29 133.3 120 66.7
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.3e-29 133.3 120 62.5
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 3.7e-29 131.7 120 63.3
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.8e-29 131.3 121 62.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.8e-28 129.4 116 66.4
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.1e-28 128.6 121 61.2
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.1e-28 128.3 119 61.3
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 6.9e-28 127.5 119 61.3
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 9.0e-28 127.1 115 62.6
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.9e-26 122.1 117 61.5
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.8e-26 121.7 121 61.2
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 3.2e-25 118.6 115 59.1
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 7.2e-25 117.5 122 59.8
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 2.7e-24 115.5 122 59.0
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 4.6e-24 114.8 121 57.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.3e-23 113.2 121 61.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.3e-23 112.5 121 57.0
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 3.9e-23 111.7 120 55.0
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 3.9e-23 111.7 124 55.6
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 3.9e-23 111.7 121 57.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 3.9e-23 111.7 121 57.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 3.9e-23 111.7 121 57.0
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 3.9e-23 111.7 120 58.3
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 5.1e-23 111.3 114 54.4
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 6.7e-23 110.9 121 55.4
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 8.7e-23 110.5 81 75.3
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.5e-22 109.8 121 56.2
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.5e-22 109.0 120 58.3
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.5e-22 109.0 120 58.3
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.5e-22 109.0 115 57.4
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.3e-22 108.6 81 74.1
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 3.3e-22 108.6 156 48.1
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 7.4e-22 107.5 121 55.4
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 7.4e-22 107.5 121 55.4
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 7.4e-22 107.5 121 55.4
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 7.4e-22 107.5 122 54.9
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 2.2e-21 105.9 120 55.0
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.2e-21 105.9 81 72.8
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 3.7e-21 105.1 126 53.2
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 4.8e-21 104.8 121 54.5
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.8e-20 102.8 122 54.9
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 4.1e-20 101.7 121 50.4
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 5.3e-20 101.3 120 53.3
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.0e-20 100.5 85 65.9
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.2e-19 100.1 119 53.8
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.2e-19 100.1 118 50.0
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.5e-19 99.8 118 49.2
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 4.5e-19 98.2 117 53.8
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 5.9e-19 97.8 112 58.0
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.3e-18 96.7 107 55.1
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 5.0e-18 94.7 90 60.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 6.5e-18 94.4 115 51.3
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 2.5e-17 92.4 126 49.2
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.2e-17 91.7 78 70.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 2.1e-16 89.4 69 72.5
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.4e-15 86.7 115 51.3
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.0e-15 85.5 106 49.1
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.0e-15 85.5 120 50.8
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.1e-14 83.6 81 61.7
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.5e-14 83.2 47 93.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 2.8e-13 79.0 89 53.9
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.8e-13 78.2 114 43.9
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 6.3e-13 77.8 86 52.3
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.3e-12 74.7 75 56.0
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 9.1e-12 73.9 100 46.0
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.0e-11 72.8 197 34.0
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 5.0e-10 68.2 109 44.0
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.5e-10 67.8 73 56.2
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.5e-10 67.8 73 56.2
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.4e-09 66.6 81 51.9
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.5e-09 65.9 115 40.0
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 8.8e-07 57.4 36 75.0
Gorai.006G112600 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.5e-06 56.6 55 60.0
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.5e-06 56.6 74 47.3
HPP92_003218 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.5e-06 56.6 34 79.4
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 2.6e-06 55.8 36 75.0
CBR_g38024 Chara braunii HOM05D004934 ORTHO05D005924 3.3e-06 55.5 115 36.5
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 9.7e-06 53.9 39 74.4


User provided reference genes

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