Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 5.6e-80 300.8 146 100.0
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.0e-65 253.4 146 84.2
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.3e-65 252.3 146 83.6
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 3.9e-65 251.5 146 83.6
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 5.6e-64 247.7 146 81.5
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 9.6e-64 246.9 146 81.5
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 1.4e-62 243.0 147 82.3
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 1.4e-62 243.0 152 78.9
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 6.9e-62 240.7 144 81.9
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.2e-61 240.0 149 78.5
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 1.2e-61 240.0 150 79.3
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 3.4e-61 238.4 145 75.9
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 3.4e-61 238.4 145 75.9
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 4.5e-61 238.0 148 77.0
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 7.6e-61 237.3 150 76.7
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 9.9e-61 236.9 145 76.6
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 1.3e-60 236.5 150 76.0
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 1.7e-60 236.1 146 79.5
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 2.9e-60 235.3 146 76.0
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 2.9e-60 235.3 145 75.2
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 2.9e-60 235.3 145 74.5
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 2.9e-60 235.3 146 76.0
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 3.8e-60 235.0 145 76.6
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 3.8e-60 235.0 145 76.6
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 3.8e-60 235.0 145 76.6
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 4.9e-60 234.6 146 77.4
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 4.9e-60 234.6 150 76.7
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 8.4e-60 233.8 145 74.5
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 8.4e-60 233.8 145 74.5
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 8.4e-60 233.8 151 76.2
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 8.4e-60 233.8 150 76.0
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 1.1e-59 233.4 150 77.3
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 1.4e-59 233.0 150 76.7
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 2.4e-59 232.3 146 75.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 2.4e-59 232.3 145 77.9
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 4.2e-59 231.5 145 76.6
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 4.2e-59 231.5 152 76.3
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 4.2e-59 231.5 151 75.5
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 7.1e-59 230.7 146 76.7
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.6e-58 229.6 146 76.7
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 2.7e-58 228.8 145 75.9
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 2.7e-58 228.8 145 75.9
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 3.5e-58 228.4 145 73.8
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 4.6e-58 228.0 146 73.3
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.0e-57 226.9 145 75.2
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 1.0e-57 226.9 145 78.6
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.3e-57 226.5 146 74.7
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 1.3e-57 226.5 146 76.7
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 3.9e-57 224.9 149 73.2
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 6.7e-57 224.2 147 75.5
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 8.7e-57 223.8 146 74.0
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 1.1e-56 223.4 146 75.3
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 2.5e-56 222.2 141 78.0
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 2.5e-56 222.2 146 74.7
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 2.5e-56 222.2 146 74.7
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 4.3e-56 221.5 120 84.2
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 5.6e-56 221.1 141 74.5
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 7.4e-56 220.7 146 74.0
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 1.3e-55 219.9 140 73.6
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 6.2e-55 217.6 150 72.7
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 6.2e-55 217.6 142 73.9
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 6.2e-55 217.6 147 74.8
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 1.8e-54 216.1 143 76.2
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 3.1e-54 215.3 141 73.8
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 5.3e-54 214.5 152 71.7
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 6.9e-54 214.2 114 83.3
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 1.2e-53 213.4 145 73.1
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.5e-53 213.0 143 74.8
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 2.0e-53 212.6 115 82.6
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 2.0e-53 212.6 147 72.1
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 4.5e-53 211.5 146 72.6
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 5.8e-53 211.1 145 70.3
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 7.6e-53 210.7 119 79.8
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 7.6e-53 210.7 147 73.5
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 9.9e-53 210.3 142 72.5
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.3e-52 209.9 142 71.8
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 2.2e-52 209.1 120 81.7
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 2.2e-52 209.1 146 68.5
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 2.9e-52 208.8 121 81.0
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 4.9e-52 208.0 115 82.6
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 4.9e-52 208.0 146 68.5
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 6.4e-52 207.6 148 66.9
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 7.1e-51 204.1 148 70.9
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 9.3e-51 203.8 146 71.9
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 9.3e-51 203.8 121 80.2
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 2.1e-50 202.6 119 77.3
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 2.1e-50 202.6 148 68.2
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 3.5e-50 201.8 120 76.7
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 6.0e-50 201.1 145 66.2
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 7.9e-50 200.7 148 68.9
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.3e-49 199.9 148 68.2
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 1.3e-49 199.9 148 68.2
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 2.3e-49 199.1 120 77.5
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 3.0e-49 198.7 149 68.5
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.9e-49 198.4 148 67.6
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 5.1e-49 198.0 145 64.1
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 5.1e-49 198.0 148 67.6
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 6.7e-49 197.6 148 68.2
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.5e-48 195.7 142 66.9
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 2.5e-48 195.7 113 77.9
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 8.2e-47 190.7 142 66.9
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 1.1e-46 190.3 144 67.4
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 5.3e-46 188.0 145 66.2
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 3.4e-45 185.3 141 66.7
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 1.4e-43 179.9 120 70.0
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 2.7e-42 175.6 96 79.2
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 3.0e-41 172.2 140 61.4
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 1.1e-40 170.2 114 72.8
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.9e-40 169.5 86 86.0
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 3.3e-40 168.7 145 55.2
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 1.6e-39 166.4 147 57.8
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.2e-39 166.0 148 57.4
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 2.2e-39 166.0 120 70.8
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 4.1e-38 161.8 84 83.3
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 4.5e-37 158.3 115 72.2
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.7e-36 156.4 90 76.7
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 1.9e-35 152.9 120 65.8
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 4.2e-35 151.8 117 62.4
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 5.7e-32 141.4 94 72.3
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 5.7e-32 141.4 115 63.5
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 4.8e-31 138.3 113 67.3
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 8.2e-31 137.5 118 63.6
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 3.1e-30 135.6 145 51.0
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.2e-29 133.7 115 64.3
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 1.2e-29 133.7 89 69.7
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 2.0e-24 116.3 91 68.1
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 3.7e-23 112.1 89 62.9
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 4.5e-21 105.1 129 41.1
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.4e-19 100.1 69 75.4
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 1.0e-17 94.0 107 45.8
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 6.3e-15 84.7 83 60.2
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 1.8e-14 83.2 158 37.3
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 1.5e-08 63.5 75 52.0
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 7.5e-08 61.2 75 50.7


User provided reference genes

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