Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 1.4e-94 349.7 192 100.0
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 3.4e-77 292.0 197 82.2
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.1e-74 282.7 195 82.6
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 2.1e-74 282.7 195 82.6
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.3e-73 280.0 195 82.1
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 2.3e-65 252.7 189 75.7
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 6.7e-65 251.1 182 76.9
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.9e-64 249.6 145 93.8
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 3.3e-64 248.8 195 74.4
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 4.3e-64 248.4 194 75.3
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 7.4e-64 247.7 191 75.9
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 3.7e-63 245.4 189 75.1
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 6.3e-63 244.6 187 74.9
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 8.2e-63 244.2 192 74.5
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 1.1e-62 243.8 198 71.2
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 1.8e-62 243.0 194 75.3
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 4.1e-62 241.9 192 72.4
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 1.2e-61 240.4 194 72.7
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 2.6e-61 239.2 188 73.9
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 3.4e-61 238.8 195 74.4
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 4.5e-61 238.4 195 73.8
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 4.5e-61 238.4 185 75.1
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 5.9e-61 238.0 185 76.2
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 5.9e-61 238.0 198 72.7
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 1.7e-60 236.5 154 82.5
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 2.2e-60 236.1 189 71.4
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 2.2e-60 236.1 189 71.4
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 2.2e-60 236.1 156 82.1
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 2.2e-60 236.1 151 83.4
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 2.2e-60 236.1 188 72.3
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 2.9e-60 235.7 185 73.0
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 5.0e-60 235.0 169 76.9
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 5.0e-60 235.0 198 70.7
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.0e-60 235.0 198 70.7
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 5.0e-60 235.0 189 70.4
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 5.0e-60 235.0 192 72.4
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 8.5e-60 234.2 192 68.8
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 8.5e-60 234.2 192 71.4
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 1.1e-59 233.8 193 73.1
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 1.1e-59 233.8 184 73.9
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 1.4e-59 233.4 194 71.1
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 1.4e-59 233.4 192 70.8
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 1.9e-59 233.0 191 71.7
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 3.2e-59 232.3 189 71.4
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 3.2e-59 232.3 175 73.1
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 4.2e-59 231.9 152 82.2
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.5e-59 231.5 198 70.2
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 7.2e-59 231.1 166 77.7
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 7.2e-59 231.1 189 71.4
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 9.4e-59 230.7 207 70.5
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 1.2e-58 230.3 194 72.2
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.6e-58 229.9 166 75.3
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 2.1e-58 229.6 193 68.9
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 2.7e-58 229.2 156 80.1
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 3.6e-58 228.8 187 72.2
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 3.6e-58 228.8 156 80.1
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 4.6e-58 228.4 163 78.5
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 7.9e-58 227.6 198 68.7
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 1.0e-57 227.3 178 71.9
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.0e-57 227.3 165 75.2
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 1.0e-57 227.3 186 70.4
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.4e-57 226.9 198 68.7
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 1.4e-57 226.9 193 69.9
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 1.4e-57 226.9 197 69.0
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 2.3e-57 226.1 193 71.0
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 2.3e-57 226.1 186 71.0
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 5.1e-57 224.9 193 70.5
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 5.1e-57 224.9 185 71.4
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 5.1e-57 224.9 185 71.4
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 5.1e-57 224.9 193 68.9
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 5.1e-57 224.9 185 69.7
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 5.1e-57 224.9 156 78.8
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 6.7e-57 224.6 191 69.1
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 8.8e-57 224.2 154 79.9
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 1.1e-56 223.8 191 68.6
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 1.1e-56 223.8 191 68.6
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 1.1e-56 223.8 191 68.6
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 7.4e-56 221.1 192 67.7
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 9.7e-56 220.7 184 71.2
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 9.7e-56 220.7 149 79.2
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 1.3e-55 220.3 153 79.7
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 6.3e-55 218.0 191 66.5
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 8.2e-55 217.6 209 64.6
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 1.4e-54 216.9 184 67.9
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 1.4e-54 216.9 197 65.0
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 1.8e-54 216.5 194 64.9
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 3.1e-54 215.7 154 78.6
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 5.3e-54 214.9 194 69.1
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 6.9e-54 214.5 187 68.4
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 6.9e-54 214.5 193 64.8
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 1.5e-53 213.4 185 66.5
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 3.4e-53 212.2 196 65.3
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 1.7e-52 209.9 183 68.3
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 3.8e-52 208.8 192 65.1
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 1.9e-51 206.5 183 67.2
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 2.5e-51 206.1 204 64.2
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 3.2e-51 205.7 151 74.8
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 3.2e-51 205.7 196 65.3
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 7.2e-51 204.5 130 83.8
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 4.4e-48 195.3 193 63.2
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 3.1e-46 189.1 138 74.6
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 5.3e-46 188.3 147 70.1
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 7.0e-46 188.0 189 60.8
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 1.2e-45 187.2 120 86.7
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 1.5e-45 186.8 180 61.7
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 7.7e-45 184.5 143 67.8
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 2.9e-44 182.6 119 82.4
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 5.0e-44 181.8 117 86.3
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 8.5e-44 181.0 117 83.8
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 2.5e-43 179.5 150 65.3
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 6.1e-42 174.9 128 73.4
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 3.9e-41 172.2 187 56.1
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 4.8e-39 165.2 179 55.3
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 1.4e-38 163.7 108 81.5
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 3.5e-37 159.1 133 60.9
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 3.0e-33 146.0 134 60.4
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 8.8e-33 144.4 150 61.3
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.0e-32 143.3 169 59.2
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 3.3e-32 142.5 139 55.4
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.2e-31 139.8 169 56.2
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 8.2e-31 137.9 169 55.6
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 5.3e-30 135.2 182 51.1
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 3.0e-25 119.4 137 57.7
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 5.2e-25 118.6 86 76.7
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 1.3e-23 114.0 92 70.7
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 9.1e-22 107.8 78 76.9
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 7.2e-19 98.2 83 66.3
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.8e-17 93.6 57 77.2
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 5.4e-06 55.5 105 33.3


User provided reference genes

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