Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 1.2e-41 172.6 79 100.0
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 3.1e-40 167.9 79 97.5
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 3.4e-39 164.5 79 92.4
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 9.9e-39 162.9 79 91.1
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 1.3e-38 162.5 79 93.7
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 1.1e-37 159.5 79 89.9
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 1.4e-37 159.1 78 87.2
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 3.2e-37 157.9 81 90.1
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 7.1e-37 156.8 79 89.9
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.6e-36 155.6 79 91.1
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 1.6e-36 155.6 79 89.9
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 2.1e-36 155.2 79 84.8
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 2.1e-36 155.2 79 91.1
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 7.8e-36 153.3 79 82.3
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 1.3e-35 152.5 80 88.8
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 1.7e-35 152.1 79 81.0
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 2.3e-35 151.8 79 87.3
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 2.3e-35 151.8 79 87.3
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 3.0e-35 151.4 79 82.3
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 3.9e-35 151.0 79 88.6
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 5.1e-35 150.6 79 87.3
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 5.1e-35 150.6 79 86.1
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 5.1e-35 150.6 79 86.1
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 6.6e-35 150.2 79 86.1
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 8.6e-35 149.8 79 87.3
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 1.9e-34 148.7 79 86.1
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 4.3e-34 147.5 79 84.8
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 7.3e-34 146.7 81 80.2
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 9.5e-34 146.4 79 86.1
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 1.2e-33 146.0 86 80.2
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 2.1e-33 145.2 78 87.2
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 3.6e-33 144.4 79 83.5
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 6.2e-33 143.7 81 76.5
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 6.2e-33 143.7 81 76.5
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 8.1e-33 143.3 79 82.3
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 1.8e-32 142.1 79 81.0
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.4e-32 141.7 79 75.9
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 5.2e-32 140.6 86 75.6
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 5.2e-32 140.6 72 83.3
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 6.8e-32 140.2 79 79.7
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 8.9e-32 139.8 77 80.5
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 2.6e-31 138.3 85 70.6
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.6e-31 138.3 86 73.3
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 4.4e-31 137.5 82 76.8
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 7.6e-31 136.7 74 82.4
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 7.6e-31 136.7 77 74.0
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 9.9e-31 136.3 79 77.2
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 2.2e-30 135.2 70 82.9
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 2.9e-30 134.8 80 75.0
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 3.8e-30 134.4 86 72.1
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 6.4e-30 133.7 83 68.7
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 6.4e-30 133.7 81 70.4
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 8.4e-30 133.3 84 78.6
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 1.4e-29 132.5 78 74.4
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.4e-29 132.5 86 69.8
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-29 132.5 86 69.8
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-29 132.5 86 69.8
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-29 132.5 86 69.8
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 2.4e-29 131.7 79 73.4
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 3.2e-29 131.3 79 70.9
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 4.1e-29 131.0 78 71.8
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 4.1e-29 131.0 87 67.8
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 7.1e-29 130.2 79 73.4
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 7.1e-29 130.2 79 73.4
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 7.1e-29 130.2 85 69.4
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 7.1e-29 130.2 85 69.4
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 7.1e-29 130.2 85 69.4
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 9.2e-29 129.8 80 73.8
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.6e-28 129.0 79 69.6
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 4.6e-28 127.5 78 70.5
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 1.7e-27 125.6 81 70.4
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 3.0e-27 124.8 79 72.2
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 3.9e-27 124.4 81 69.1
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 3.9e-27 124.4 81 69.1
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 3.9e-27 124.4 81 69.1
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 3.9e-27 124.4 81 72.8
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 3.9e-27 124.4 81 72.8
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 8.7e-27 123.2 81 71.6
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.1e-26 122.9 79 67.1
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 1.5e-26 122.5 80 67.5
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 1.5e-26 122.5 79 68.4
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 1.5e-26 122.5 81 69.1
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 7.3e-26 120.2 81 69.1
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 9.6e-26 119.8 81 70.4
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 1.6e-25 119.0 81 67.9
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 2.4e-24 115.2 80 58.8
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 1.5e-23 112.5 81 58.0
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 4.4e-23 110.9 72 73.6
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 3.7e-09 64.7 47 55.3
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 1.2e-07 59.7 42 57.1
MBI18_g28520_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.3e-06 56.2 36 58.3


User provided reference genes

Program Settings