Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 8.3e-150 533.9 310 100.0
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 8.4e-134 480.7 310 83.2
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 1.0e-123 447.2 310 81.6
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.2e-111 407.1 310 75.5
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 3.5e-108 395.6 311 74.6
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 5.7e-106 388.3 310 73.9
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 4.6e-100 368.6 309 68.9
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 4.2e-93 345.5 313 65.5
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.0e-91 340.9 313 64.2
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 1.8e-88 330.1 311 62.1
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 3.1e-88 329.3 313 62.9
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.4e-85 320.5 312 61.5
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.4e-85 320.5 312 62.8
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.4e-85 320.5 326 60.4
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 5.5e-85 318.5 324 59.9
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 9.4e-85 317.8 316 61.1
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 5.2e-83 312.0 313 61.3
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 6.7e-83 311.6 329 58.1
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 5.7e-82 308.5 312 60.6
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 2.8e-81 306.2 311 60.8
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 4.5e-79 298.9 310 59.0
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 5.9e-79 298.5 326 56.4
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 7.7e-79 298.1 312 61.2
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 3.8e-78 295.8 314 58.3
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 2.5e-77 293.1 340 53.8
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 3.2e-77 292.7 320 56.2
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 4.2e-77 292.4 320 55.6
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.5e-77 292.0 326 55.5
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.5e-77 292.0 326 55.5
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.5e-77 292.0 326 56.7
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 5.5e-77 292.0 209 73.7
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 9.4e-77 291.2 319 57.1
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 9.4e-77 291.2 313 56.5
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 2.1e-76 290.0 326 55.2
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 4.7e-76 288.9 328 56.7
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 1.0e-75 287.7 320 55.6
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 1.8e-75 287.0 319 55.5
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 3.0e-75 286.2 319 56.1
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 6.7e-75 285.0 311 55.0
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.2e-74 284.3 309 57.0
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 1.2e-74 284.3 352 51.4
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 1.5e-74 283.9 318 56.3
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 2.6e-74 283.1 312 58.3
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 3.3e-74 282.7 320 53.8
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 5.7e-74 282.0 315 57.5
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 7.5e-74 281.6 318 55.3
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 7.5e-74 281.6 312 54.5
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.7e-73 280.4 320 54.7
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 2.2e-73 280.0 344 57.0
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 2.8e-73 279.6 344 53.8
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 3.7e-73 279.3 323 55.1
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.1e-72 277.7 315 54.9
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 1.4e-72 277.3 320 54.4
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 1.8e-72 276.9 308 54.2
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 5.3e-72 275.4 321 54.5
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.6e-71 273.9 320 53.4
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 2.0e-71 273.5 314 55.1
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 2.0e-71 273.5 319 54.2
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 3.5e-71 272.7 312 58.0
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 3.5e-71 272.7 312 58.0
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 3.5e-71 272.7 321 52.0
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 1.0e-70 271.2 322 55.0
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 3.8e-70 269.2 325 53.8
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 4.2e-69 265.8 356 49.2
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 5.5e-69 265.4 285 62.5
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.2e-68 264.2 312 51.3
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 1.2e-68 264.2 321 52.3
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 2.1e-68 263.5 319 56.7
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.7e-68 263.1 324 53.1
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 4.7e-68 262.3 309 54.4
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 4.0e-67 259.2 331 55.3
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 4.0e-67 259.2 326 50.3
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 5.2e-67 258.8 321 51.4
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 8.8e-67 258.1 222 66.2
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 8.8e-67 258.1 333 52.3
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.5e-66 257.3 318 50.3
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 4.4e-66 255.8 314 50.3
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 5.7e-66 255.4 320 50.6
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 9.8e-66 254.6 321 49.5
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 9.8e-66 254.6 317 50.2
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.8e-65 253.1 317 48.9
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.8e-65 253.1 317 48.9
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 4.8e-65 252.3 323 51.4
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 4.8e-65 252.3 329 53.2
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 4.8e-65 252.3 311 51.4
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 6.3e-65 251.9 317 49.8
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 2.4e-64 250.0 314 51.0
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 2.4e-64 250.0 324 50.9
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 7.0e-64 248.4 320 49.7
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 9.1e-64 248.1 319 51.7
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 1.2e-63 247.7 307 53.4
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 6.5e-62 241.9 322 50.0
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 8.6e-62 241.5 273 58.6
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 8.6e-62 241.5 311 49.2
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 1.5e-61 240.7 214 66.4
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 3.6e-60 236.1 312 49.7
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 4.0e-59 232.6 268 54.1
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 4.0e-59 232.6 262 54.2
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 1.5e-58 230.7 329 47.7
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.7e-57 227.3 321 48.6
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 2.2e-57 226.9 320 49.1
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.4e-56 224.2 310 47.7
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 1.8e-56 223.8 193 62.7
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 1.8e-56 223.8 193 62.7
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.2e-55 221.1 308 45.8
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 2.9e-54 216.5 263 54.4
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.1e-53 214.5 190 63.2
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.1e-53 214.5 312 51.6
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 3.3e-53 213.0 261 52.1
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 3.3e-53 213.0 174 69.0
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 7.3e-53 211.8 313 51.4
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 7.3e-53 211.8 313 51.4
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 4.7e-52 209.1 315 51.4
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 2.0e-50 203.8 337 41.8
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.4e-50 202.6 308 44.2
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 7.5e-50 201.8 244 55.3
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 3.7e-49 199.5 213 55.9
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 8.3e-49 198.4 213 54.9
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 4.1e-48 196.1 216 52.3
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 7.8e-47 191.8 257 49.8
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 6.6e-46 188.7 227 53.3
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 3.4e-42 176.4 271 50.6
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 3.7e-41 172.9 209 52.2
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 3.7e-41 172.9 341 37.8
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 4.6e-39 166.0 207 50.2
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.5e-37 160.2 170 57.1
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 1.2e-36 157.9 232 53.0
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 4.7e-36 156.0 210 55.7
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.5e-34 151.0 198 53.5
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 2.6e-34 150.2 200 45.5
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 7.5e-34 148.7 214 48.1
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.7e-33 146.4 218 51.4
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 8.3e-33 145.2 101 76.2
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.1e-32 144.8 229 43.7
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 1.4e-32 144.4 108 70.4
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.1e-29 134.8 212 44.3
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.2e-28 131.3 110 63.6
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.2e-28 131.3 312 37.8
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 8.1e-28 128.6 319 34.5
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 7.6e-26 122.1 100 68.0
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 2.7e-23 113.6 98 63.3
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 6.2e-20 102.4 149 49.7
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 2.4e-19 100.5 80 67.5
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.2e-18 98.2 75 70.7
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 9.3e-16 88.6 317 30.0
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.6e-15 87.8 110 49.1
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 5.1e-14 82.8 96 56.2
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 1.1e-11 75.1 144 49.3
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 4.0e-11 73.2 95 47.4
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 3.4e-10 70.1 48 75.0
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 3.9e-06 56.6 209 30.6
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 6.7e-06 55.8 138 31.9


User provided reference genes

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