Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G274300 Theobroma cacao HOM05D002687 ORTHO05D002052 1.9e-119 432.6 220 100.0
Duzib168G2137 Durio zibethinus HOM05D002687 ORTHO05D002052 2.0e-36 156.8 198 42.9
COL.COLO4_22671 Corchorus olitorius HOM05D002687 ORTHO05D002052 3.2e-31 139.4 198 41.9
Ciclev10029214m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.7e-24 117.1 229 38.4
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.0e-22 108.2 198 29.8
Gohir.A09G098101 Gossypium hirsutum HOM05D002687 ORTHO05D002052 2.0e-20 103.6 218 35.8
Eucgr.B03819 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.3e-19 100.9 190 33.2
Sabra09G0012300 Salix brachista HOM05D002687 ORTHO05D002052 1.1e-18 97.8 204 32.4
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 1.4e-18 97.4 203 31.0
TPR.G4667 Trifolium pratense HOM05D002687 ORTHO05D002052 2.4e-18 96.7 194 29.9
Atru.chr3.3133 Acer truncatum HOM05D002687 ORTHO05D002052 5.4e-18 95.5 196 31.1
Eucgr.B03820 Eucalyptus grandis HOM05D002687 ORTHO05D002052 5.4e-18 95.5 222 32.4
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.2e-18 94.7 205 30.2
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.9e-17 92.0 197 30.5
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 6.6e-16 88.6 184 27.7
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 6.6e-16 88.6 202 28.2
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 8.6e-16 88.2 174 28.7
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 8.6e-16 88.2 202 28.7
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.6e-16 88.2 191 29.8
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 1.5e-15 87.4 199 27.1
arahy.Tifrunner.gnm1.ann1.N0JQU4 Arachis hypogaea HOM05D002687 ORTHO05D002052 7.3e-15 85.1 186 29.0
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 7.3e-15 85.1 196 27.0
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 7.3e-15 85.1 202 27.2
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 7.3e-15 85.1 202 27.2
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 9.5e-15 84.7 204 28.9
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.5e-15 84.7 189 28.6
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 1.2e-14 84.3 205 28.3
Medtr2g087080 Medicago truncatula HOM05D002687 ORTHO05D002052 1.2e-14 84.3 210 28.6
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 1.2e-14 84.3 196 26.5
arahy.Tifrunner.gnm1.ann1.UY1REM Arachis hypogaea HOM05D002687 ORTHO05D002052 1.6e-14 84.0 186 28.5
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 6.2e-14 82.0 183 25.1
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 8.0e-14 81.6 189 29.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 8.0e-14 81.6 189 27.0
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.0e-13 81.3 190 28.9
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 2.3e-13 80.1 188 27.7
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 4.0e-13 79.3 195 25.1
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 8.9e-13 78.2 184 26.1
QL01p011200 Quercus lobata HOM05D002687 ORTHO05D002052 8.9e-13 78.2 208 30.8
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 8.9e-13 78.2 189 26.5
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.2e-12 77.8 207 30.4
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 1.5e-12 77.4 195 24.6
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 2.0e-12 77.0 201 24.4
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 2.0e-12 77.0 187 28.9
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 2.6e-12 76.6 184 28.8
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 2.6e-12 76.6 184 28.8
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 2.6e-12 76.6 208 26.0
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 2.6e-12 76.6 189 27.0
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 3.4e-12 76.3 207 27.5
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 5.8e-12 75.5 198 28.3
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 5.8e-12 75.5 207 27.1
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 5.8e-12 75.5 201 24.9
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 7.5e-12 75.1 196 24.5
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 9.8e-12 74.7 209 29.7
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 9.8e-12 74.7 209 29.7
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 9.8e-12 74.7 203 23.6
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.3e-11 74.3 195 26.7
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.7e-11 73.9 195 25.6
Lj3g0023997 Lotus japonicus HOM05D002687 ORTHO05D002052 1.7e-11 73.9 190 27.4
Aqoxy1G00677 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 2.2e-11 73.6 213 27.7
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 2.2e-11 73.6 210 25.2
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 2.2e-11 73.6 203 26.6
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.7e-11 72.8 195 24.6
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.7e-11 72.8 195 24.6
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.9e-11 72.4 209 29.2
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 4.9e-11 72.4 194 27.3
Potri.009G020000 Populus trichocarpa HOM05D002687 ORTHO05D002052 4.9e-11 72.4 197 25.9
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.9e-11 72.4 162 27.2
Ciclev10029940m.g Citrus clementina HOM05D002687 ORTHO05D002052 6.4e-11 72.0 168 35.7
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 6.4e-11 72.0 187 25.1
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 6.4e-11 72.0 195 26.2
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 6.4e-11 72.0 187 28.3
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 8.3e-11 71.6 174 27.6
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 8.3e-11 71.6 204 24.0
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.1e-10 71.2 192 24.0
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.4e-10 70.9 189 24.9
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 2.4e-10 70.1 188 24.5
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 2.4e-10 70.1 197 24.9
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 2.4e-10 70.1 190 25.3
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 2.4e-10 70.1 193 24.4
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 4.1e-10 69.3 192 26.0
Haze_23312 Corylus avellana HOM05D002687 ORTHO05D002052 5.4e-10 68.9 222 26.6
Phvul.011G098100 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 7.0e-10 68.6 187 27.3
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 7.0e-10 68.6 209 26.3
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 7.0e-10 68.6 178 25.8
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 9.2e-10 68.2 201 21.4
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.2e-09 67.8 186 23.7
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 1.2e-09 67.8 198 25.3
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.6e-09 67.4 183 24.0
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 1.6e-09 67.4 185 24.3
Hma1.2p1_0051F.1_g029590 Hydrangea macrophylla HOM05D000733 ORTHO05D000649 1.6e-09 67.4 183 22.4
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 2.7e-09 66.6 215 22.8
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 2.7e-09 66.6 169 24.3
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 2.7e-09 66.6 193 27.5
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 2.7e-09 66.6 202 26.7
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 2.7e-09 66.6 193 22.8
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 3.5e-09 66.2 190 23.7
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 6.0e-09 65.5 193 23.3
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 6.0e-09 65.5 183 25.7
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 7.8e-09 65.1 185 23.2
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 7.8e-09 65.1 184 23.9
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 1.0e-08 64.7 206 24.3
Glyma.12G093700 Glycine max HOM05D002687 ORTHO05D002052 1.3e-08 64.3 206 28.6
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.7e-08 63.9 202 26.2
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 2.3e-08 63.5 202 23.8
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 2.3e-08 63.5 196 26.0
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 2.3e-08 63.5 195 24.1
HanXRQChr02g0055291 Helianthus annuus HOM05D000733 ORTHO05D000649 3.0e-08 63.2 188 25.0
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 3.9e-08 62.8 193 25.4
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 3.9e-08 62.8 185 23.2
DCAR_015500 Daucus carota HOM05D000980 ORTHO05D000649 8.6e-08 61.6 177 22.6
Duzib150G0865 Durio zibethinus HOM05D002687 ORTHO05D002052 1.5e-07 60.8 184 25.5
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.5e-07 60.8 202 24.8
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.9e-07 60.5 198 23.2
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.9e-07 60.5 185 22.7
Sopen11g026240 Solanum pennellii HOM05D000733 ORTHO05D000649 1.9e-07 60.5 161 21.7
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 2.5e-07 60.1 203 23.6
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 3.3e-07 59.7 189 22.8
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.3e-07 59.7 191 23.0
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 3.3e-07 59.7 184 22.8
Solyc11g066490.1 Solanum lycopersicum HOM05D000733 ORTHO05D000649 4.3e-07 59.3 161 20.5
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 5.6e-07 58.9 170 27.1
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 5.6e-07 58.9 204 22.1
Aqoxy1G00678 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 9.5e-07 58.2 194 25.3
Cfa009946 Carpinus fangiana HOM05D002687 ORTHO05D002052 9.5e-07 58.2 221 22.2
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 9.5e-07 58.2 195 24.1
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 9.5e-07 58.2 185 23.2
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 1.2e-06 57.8 198 22.2
Rhsim13G0101800 Rhododendron simsii HOM05D000733 ORTHO05D000649 1.2e-06 57.8 176 22.7
MELO3C025576.2 Cucumis melo HOM05D002687 ORTHO05D034712 2.8e-06 56.6 219 23.7
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 2.8e-06 56.6 203 21.2
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 3.6e-06 56.2 184 22.8
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 3.6e-06 56.2 184 22.8
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 3.6e-06 56.2 197 23.4
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 4.7e-06 55.8 191 22.5
ClCG01G011580 Citrullus lanatus HOM05D002687 ORTHO05D034712 6.2e-06 55.5 140 25.7
Atru.chr3.3498 Acer truncatum HOM05D000980 ORTHO05D000649 8.1e-06 55.1 168 22.6
Prupe.7G097000 Prunus persica HOM05D002687 ORTHO05D002052 8.1e-06 55.1 201 25.4


User provided reference genes

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