Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 7.1e-201 703.7 364 100.0
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 1.7e-157 559.7 376 80.1
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 3.8e-146 521.9 365 78.4
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 4.3e-145 518.5 381 75.3
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 7.5e-142 507.7 364 78.0
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 5.1e-114 415.2 278 79.1
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 5.3e-111 405.2 368 62.8
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 2.0e-110 403.3 362 63.0
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 4.4e-110 402.1 365 62.2
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 6.4e-109 398.3 372 62.4
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 1.1e-108 397.5 370 64.3
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 5.4e-108 395.2 362 62.2
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 2.1e-107 393.3 361 62.3
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 4.6e-107 392.1 366 62.6
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 7.8e-107 391.3 370 60.5
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 4.8e-104 382.1 374 59.4
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 2.0e-102 376.7 373 60.9
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 2.6e-102 376.3 372 58.6
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 3.4e-102 375.9 384 60.7
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 5.8e-102 375.2 370 58.9
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 1.7e-101 373.6 368 59.8
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 2.2e-101 373.2 367 59.9
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 1.9e-100 370.2 370 60.0
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 4.2e-100 369.0 370 59.5
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 2.7e-99 366.3 367 59.7
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 4.6e-99 365.5 369 57.2
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 6.0e-99 365.2 389 56.6
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 1.1e-97 360.9 366 57.7
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 1.1e-97 360.9 366 57.9
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 3.3e-97 359.4 363 57.6
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 5.6e-97 358.6 376 55.6
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 9.6e-97 357.8 378 55.6
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 2.1e-96 356.7 386 56.5
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 1.1e-95 354.4 373 56.3
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 3.1e-95 352.8 370 58.1
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 5.3e-95 352.1 380 53.7
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 5.3e-95 352.1 379 55.7
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 6.9e-95 351.7 410 52.9
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.5e-94 350.5 370 56.2
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 2.2e-93 346.7 452 49.6
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 2.2e-93 346.7 368 57.1
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 3.8e-93 345.9 373 55.2
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 8.4e-93 344.7 362 58.0
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 3.2e-92 342.8 378 54.8
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 5.5e-92 342.0 368 55.4
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 9.3e-92 341.3 368 54.3
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 9.3e-92 341.3 362 56.6
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 3.5e-91 339.3 368 54.1
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 3.5e-91 339.3 368 54.1
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 3.5e-91 339.3 372 55.4
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 3.5e-91 339.3 364 56.9
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 4.6e-91 339.0 374 53.7
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 1.3e-90 337.4 371 55.5
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 1.8e-90 337.0 375 53.3
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 3.9e-90 335.9 378 54.2
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 5.1e-90 335.5 374 54.5
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 1.6e-88 330.5 374 54.8
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 2.8e-88 329.7 364 55.8
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 3.7e-88 329.3 378 53.2
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 1.1e-87 327.8 400 52.0
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 5.3e-87 325.5 358 54.7
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 5.3e-87 325.5 375 54.7
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 3.4e-86 322.8 395 52.4
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 1.7e-85 320.5 365 52.1
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 2.9e-85 319.7 375 54.1
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 7.1e-84 315.1 419 51.1
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 2.1e-83 313.5 233 70.8
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 1.6e-80 303.9 318 58.2
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 9.0e-79 298.1 233 68.7
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 7.7e-78 295.0 229 66.4
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 1.3e-77 294.3 359 51.5
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 5.0e-77 292.4 381 50.7
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 3.2e-76 289.7 376 51.3
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 4.2e-76 289.3 361 51.0
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 2.2e-69 266.9 345 47.2
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 2.9e-69 266.5 377 47.5
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 4.2e-68 262.7 251 59.8
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 7.9e-67 258.5 272 56.6
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 1.8e-66 257.3 375 46.4
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 2.3e-66 256.9 467 41.1
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 2.0e-65 253.8 378 45.2
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 1.7e-64 250.8 241 57.3
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 2.2e-64 250.4 248 57.3
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 4.8e-64 249.2 413 40.7
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 9.1e-63 245.0 222 57.7
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 1.2e-62 244.6 152 84.9
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 2.0e-62 243.8 233 60.1
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 7.7e-62 241.9 242 56.6
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 7.7e-62 241.9 381 40.9
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 2.9e-61 240.0 234 56.0
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 5.0e-61 239.2 249 54.6
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 1.6e-59 234.2 374 43.6
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 6.1e-59 232.3 146 80.1
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 3.9e-58 229.6 246 54.9
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 6.7e-58 228.8 230 56.1
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 3.3e-57 226.5 274 51.8
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 1.8e-55 220.7 339 43.1
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 9.1e-55 218.4 286 48.6
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 5.5e-52 209.1 273 51.3
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 6.1e-51 205.7 393 39.4
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 3.7e-48 196.4 252 51.2
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 1.1e-47 194.9 232 50.4
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 2.0e-46 190.7 226 48.2
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 7.2e-44 182.2 376 38.0
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 1.4e-42 177.9 235 47.2
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 4.4e-41 172.9 289 44.6
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 9.8e-41 171.8 379 33.2
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 7.0e-39 165.6 222 48.6
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 1.9e-36 157.5 343 35.6
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 2.9e-32 143.7 147 57.8
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 2.9e-32 143.7 147 57.8
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 1.2e-30 138.3 198 47.5
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 1.6e-27 127.9 192 44.3
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 1.8e-26 124.4 264 36.7
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 2.7e-22 110.5 233 36.5
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 1.7e-21 107.8 141 49.6
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 6.6e-21 105.9 98 57.1
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 8.6e-21 105.5 93 60.2
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 5.6e-20 102.8 72 77.8
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.6e-19 101.3 63 79.4
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 1.5e-17 94.7 226 32.7
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 1.5e-12 78.2 87 54.0
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 3.6e-11 73.6 76 57.9
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 4.7e-11 73.2 51 68.6
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 4.7e-11 73.2 51 68.6
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 3.2e-07 60.5 40 75.0


User provided reference genes

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