Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 2.5e-75 285.4 153 100.0
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 5.2e-60 234.6 155 85.2
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 4.1e-57 224.9 156 82.7
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.6e-56 223.0 156 82.1
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 1.6e-56 223.0 156 82.1
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 8.5e-55 217.2 159 77.4
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 5.7e-43 177.9 159 70.4
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 3.7e-42 175.3 154 68.2
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 1.1e-41 173.7 163 68.1
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 4.1e-41 171.8 149 68.5
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 5.4e-41 171.4 137 71.5
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 5.4e-41 171.4 164 67.7
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 1.2e-40 170.2 110 74.5
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 3.5e-40 168.7 134 72.4
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 4.5e-40 168.3 147 67.3
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 1.7e-39 166.4 146 65.8
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 2.3e-39 166.0 159 66.0
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 2.9e-39 165.6 146 65.8
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 5.0e-39 164.9 158 65.2
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 5.0e-39 164.9 158 65.2
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 5.0e-39 164.9 140 65.7
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 6.6e-39 164.5 161 60.9
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 6.6e-39 164.5 161 60.9
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 2.5e-38 162.5 112 72.3
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 5.6e-38 161.4 126 74.6
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 9.5e-38 160.6 126 74.6
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 2.8e-37 159.1 101 78.2
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 6.1e-37 157.9 110 78.2
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 1.4e-36 156.8 134 70.1
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 3.0e-36 155.6 144 60.4
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 3.0e-36 155.6 158 67.7
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 5.2e-36 154.8 144 60.4
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 5.2e-36 154.8 147 63.9
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 8.9e-36 154.1 109 72.5
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 8.9e-36 154.1 156 59.0
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 2.6e-35 152.5 156 65.4
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 3.4e-35 152.1 143 60.8
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 4.4e-35 151.8 145 63.4
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 9.8e-35 150.6 144 60.4
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 9.8e-35 150.6 179 58.1
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 1.4e-33 146.7 141 61.7
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 1.4e-33 146.7 157 58.6
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 2.4e-33 146.0 168 63.1
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 3.2e-33 145.6 166 61.4
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 5.4e-33 144.8 150 56.7
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 7.0e-33 144.4 176 56.2
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 9.2e-33 144.1 142 61.3
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 9.2e-33 144.1 161 64.0
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 1.2e-32 143.7 165 58.8
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 2.0e-32 142.9 163 62.6
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 2.0e-32 142.9 159 55.3
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 3.5e-32 142.1 163 62.6
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 4.6e-32 141.7 163 57.7
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 7.8e-32 141.0 143 60.8
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 1.7e-31 139.8 156 58.3
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 2.3e-31 139.4 110 68.2
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 2.3e-31 139.4 159 62.3
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 3.0e-31 139.0 163 54.6
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 3.9e-31 138.7 161 58.4
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 5.0e-31 138.3 161 50.9
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 6.6e-31 137.9 157 56.1
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 8.6e-31 137.5 105 75.2
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 4.3e-30 135.2 211 41.2
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 9.5e-30 134.0 124 62.1
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 1.6e-29 133.3 167 52.7
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 2.3e-28 129.4 84 79.8
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 6.8e-28 127.9 112 64.3
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 1.2e-27 127.1 143 58.7
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 1.2e-27 127.1 85 68.2
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 1.5e-27 126.7 149 57.0
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.5e-27 126.7 88 78.4
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 3.4e-27 125.6 110 65.5
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 7.5e-27 124.4 111 63.1
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 1.7e-26 123.2 113 63.7
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 1.7e-26 123.2 162 51.2
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 4.9e-26 121.7 111 64.9
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 4.9e-26 121.7 111 64.9
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 4.9e-26 121.7 111 64.9
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 4.9e-26 121.7 111 64.9
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 8.3e-26 120.9 156 52.6
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 1.1e-25 120.6 153 46.4
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 1.9e-25 119.8 160 51.2
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 3.2e-25 119.0 156 53.2
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 9.2e-25 117.5 161 53.4
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 6.0e-24 114.8 112 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 5.0e-23 111.7 84 66.7
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 1.5e-22 110.2 95 69.5
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 4.3e-22 108.6 62 80.6
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 2.0e-19 99.8 137 56.2
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 9.8e-19 97.4 84 66.7
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 1.3e-18 97.1 84 66.7
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 1.3e-18 97.1 101 59.4
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 4.9e-18 95.1 42 92.9
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 8.3e-18 94.4 139 48.9
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 3.6e-13 79.0 115 49.6
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 6.2e-13 78.2 115 48.7
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 7.6e-11 71.2 68 57.4
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 6.4e-10 68.2 31 90.3
TPR.G22173 Trifolium pratense HOM05D007375 ORTHO05D009293 9.2e-09 64.3 105 46.7
PGR119G2080 Punica granatum HOM05D007375 ORTHO05D009293 1.2e-08 63.9 43 74.4
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 1.6e-08 63.5 36 86.1
DCAR_012259 Daucus carota HOM05D007375 ORTHO05D009293 7.8e-08 61.2 82 54.9


User provided reference genes

Program Settings