Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 3.8e-267 924.5 539 100.0
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 4.3e-202 708.4 589 76.2
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 7.3e-194 681.0 590 71.4
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 2.4e-192 676.0 594 73.9
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 4.0e-192 675.2 593 73.7
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 8.4e-190 667.5 593 73.0
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 2.2e-182 642.9 494 78.1
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 1.3e-169 600.5 595 63.9
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 9.0e-168 594.3 601 63.7
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 1.9e-165 586.6 596 62.4
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 1.2e-164 583.9 596 64.4
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 1.0e-163 580.9 588 62.8
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 3.0e-163 579.3 596 62.9
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 4.8e-161 572.0 597 62.1
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 8.2e-161 571.2 589 62.1
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 1.4e-160 570.5 588 63.1
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 1.1e-157 560.8 589 64.5
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 1.9e-157 560.1 594 63.5
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 3.2e-157 559.3 596 61.1
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 3.6e-156 555.8 597 62.8
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 3.6e-156 555.8 597 62.8
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 4.7e-156 555.4 598 62.7
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 1.8e-155 553.5 596 61.6
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 2.2e-153 546.6 599 58.8
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 2.2e-153 546.6 598 59.7
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 4.1e-152 542.3 591 59.4
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 5.3e-152 542.0 590 58.5
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 9.1e-152 541.2 587 60.1
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 2.0e-151 540.0 640 59.4
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 3.5e-151 539.3 594 59.1
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 7.7e-151 538.1 594 59.1
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 2.7e-148 529.6 620 57.6
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 2.0e-146 523.5 592 58.3
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 3.3e-146 522.7 589 56.7
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 4.4e-146 522.3 593 56.8
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 2.2e-145 520.0 588 57.0
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 3.7e-145 519.2 595 58.2
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 3.1e-144 516.2 594 57.2
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.0e-143 513.5 631 57.4
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 2.0e-143 513.5 594 57.1
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 2.0e-143 513.5 558 59.7
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 5.0e-142 508.8 607 55.8
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 1.5e-141 507.3 637 57.1
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 7.2e-141 505.0 596 57.0
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 9.4e-141 504.6 587 57.4
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.7e-140 503.1 595 56.6
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 8.0e-140 501.5 594 55.6
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.0e-139 501.1 631 56.7
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 6.7e-139 498.4 631 56.6
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 8.8e-139 498.0 587 56.6
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 2.0e-138 496.9 600 58.0
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 3.7e-137 492.7 591 58.9
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 8.3e-137 491.5 594 55.6
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 4.1e-136 489.2 637 55.9
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 9.1e-136 488.0 593 55.3
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 1.2e-135 487.6 588 55.8
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 1.6e-135 487.3 605 56.5
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 1.6e-135 487.3 591 57.2
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 2.0e-135 486.9 594 55.9
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 4.5e-135 485.7 602 54.3
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 7.7e-135 485.0 596 57.7
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 2.2e-134 483.4 598 57.9
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 6.5e-134 481.9 718 49.7
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 4.2e-133 479.2 542 60.5
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 7.2e-133 478.4 627 54.7
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 4.7e-132 475.7 592 55.4
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 6.1e-132 475.3 643 51.5
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 2.0e-130 470.3 600 55.8
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 8.3e-129 464.9 588 54.4
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 4.1e-128 462.6 590 52.7
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 5.4e-128 462.2 685 48.3
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 9.1e-128 461.5 602 52.5
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 4.5e-127 459.1 586 55.6
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 1.0e-126 458.0 588 53.2
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 2.3e-126 456.8 583 53.2
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 2.3e-126 456.8 596 55.0
Gohir.D05G080150 Gossypium hirsutum HOM05D004133 ORTHO05D004683 3.3e-125 453.0 458 60.3
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 5.5e-125 452.2 577 55.1
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 3.6e-124 449.5 584 55.0
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 1.2e-122 444.5 603 54.4
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 5.7e-122 442.2 600 52.8
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 1.4e-120 437.6 583 54.2
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 1.8e-120 437.2 520 52.1
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 3.2e-120 436.4 586 54.1
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 9.2e-120 434.9 599 51.1
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 2.0e-119 433.7 587 54.3
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 2.7e-119 433.3 592 54.1
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 4.5e-119 432.6 583 53.7
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 2.3e-118 430.3 584 53.6
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 2.3e-118 430.3 669 48.4
Gohir.A05G077350 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.5e-117 426.8 507 53.1
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 1.6e-116 424.1 566 55.3
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 4.7e-116 422.5 586 51.9
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 2.6e-114 416.8 586 53.9
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 7.5e-114 415.2 581 51.8
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 3.7e-113 412.9 582 46.9
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 4.1e-112 409.5 612 48.4
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 1.3e-110 404.4 584 52.2
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 1.5e-109 401.0 583 53.3
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 5.6e-109 399.1 511 48.3
Actinidia22457 Actinidia chinensis HOM05D004133 ORTHO05D004683 9.5e-109 398.3 422 61.1
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 1.6e-108 397.5 583 52.7
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 2.1e-108 397.1 582 53.3
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 1.4e-107 394.4 652 45.6
Gorai.009G081800 Gossypium raimondii HOM05D004133 ORTHO05D004683 1.5e-106 391.0 395 61.0
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 9.8e-106 388.3 575 51.7
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 3.2e-104 383.3 557 53.5
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 8.6e-102 375.2 563 50.4
Oeu051476.1 Olea europaea HOM05D004133 ORTHO05D004683 7.3e-101 372.1 479 48.6
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 6.8e-99 365.5 467 49.9
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 2.0e-98 364.0 579 48.9
TAR633G2810 Trochodendron aralioides HOM05D004133 ORTHO05D004683 2.6e-98 363.6 404 61.1
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 2.2e-97 360.5 598 42.3
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 1.4e-96 357.8 480 47.9
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 1.9e-96 357.5 535 51.6
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 2.4e-96 357.1 625 39.7
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 5.1e-94 349.4 581 48.7
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 1.2e-87 328.2 515 44.3
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 1.2e-87 328.2 604 39.4
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 2.7e-87 327.0 593 47.6
C09p54680 Brassica napus HOM05D001689 ORTHO05D004683 4.6e-87 326.2 491 51.3
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 2.6e-82 310.5 585 44.4
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 3.4e-82 310.1 585 44.8
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 5.3e-67 259.6 543 42.0
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 2.0e-66 257.7 606 39.1
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 5.8e-66 256.1 584 40.2
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 1.3e-65 255.0 595 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 5.5e-64 249.6 597 35.3
BcaC03g13851 Brassica carinata HOM05D004133 ORTHO05D004683 5.1e-62 243.0 371 48.8
Actinidia06347 Actinidia chinensis HOM05D004133 ORTHO05D004683 3.4e-50 203.8 239 51.9
BraA02t05632Z Brassica rapa HOM05D004133 ORTHO05D004683 1.3e-44 185.3 196 56.1
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 3.4e-42 177.2 655 26.3
Ah.08g222320 Amaranthus hybridus HOM05D004133 ORTHO05D004683 9.4e-40 169.1 263 52.9
BcaC03g13852 Brassica carinata HOM05D004133 ORTHO05D004683 3.6e-39 167.2 199 52.3
BNapus_Darmor_BZH_scaffold_38p00930 Brassica napus HOM05D004133 ORTHO05D004683 6.1e-39 166.4 196 53.1
vmacro14308 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 6.3e-36 156.4 252 43.7
Nitab4.5_0006895g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.4e-35 155.2 252 44.4
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 4.1e-35 153.7 584 28.1
SEGI_40011 Sequoiadendron giganteum HOM05D004133 ORTHO05D004683 7.0e-35 152.9 250 50.8
Peaxi162Scf00259g00026 Petunia axillaris HOM05D004133 ORTHO05D004683 1.2e-34 152.1 197 49.2
COL.COLO4_25369 Corchorus olitorius HOM05D004133 ORTHO05D004683 9.4e-32 142.5 97 77.3
Actinidia22456 Actinidia chinensis HOM05D004133 ORTHO05D004683 6.7e-30 136.3 109 64.2
RcHm_v2.0_Chr1g0344781 Rosa chinensis HOM05D004133 ORTHO05D004683 1.3e-28 132.1 148 52.7
Peaxi162Scf00259g00025 Petunia axillaris HOM05D004133 ORTHO05D004683 1.7e-25 121.7 155 47.1
BraA02t05633Z Brassica rapa HOM05D004133 ORTHO05D004683 5.5e-24 116.7 78 73.1
MSTRG.12403 Avicennia marina HOM05D004133 ORTHO05D004683 7.2e-24 116.3 127 72.4
Sed0022805 Sechium edule HOM05D004133 ORTHO05D004683 1.6e-23 115.2 78 75.6
Nitab4.5_0006895g0020 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.6e-23 114.0 139 48.9
Hma1.2p1_1811F.1_g303600 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 3.0e-22 110.9 83 73.5
Rhsim13G0198800 Rhododendron simsii HOM05D004133 ORTHO05D004683 8.8e-22 109.4 109 79.8
C05p31580 Brassica napus HOM05D004133 ORTHO05D004683 2.6e-21 107.8 108 56.5
BcaB04g17121 Brassica carinata HOM05D004133 ORTHO05D004683 3.7e-20 104.0 80 63.8
BolC2t07129H Brassica oleracea HOM05D004133 ORTHO05D004683 2.7e-18 97.8 119 69.7
BcaC04g19526 Brassica carinata HOM05D004133 ORTHO05D004683 5.0e-17 93.6 101 76.2
Dinv18868 Davidia involucrata HOM05D004133 ORTHO05D004683 2.5e-16 91.3 76 60.5
Nitab4.5_0006895g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.0e-14 85.9 79 60.8
Nitab4.5_0002426g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.3e-14 84.7 154 42.9
C05p31570 Brassica napus HOM05D004133 ORTHO05D004683 3.4e-13 80.9 72 58.3
BolC5t31880H Brassica oleracea HOM05D004133 ORTHO05D004683 4.4e-13 80.5 71 59.2
Nitab4.5_0001357g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 6.3e-12 76.6 71 52.1
Lsat_1_v5_gn_8_40680 Lactuca sativa HOM05D000005 ORTHO05D000012 8.3e-12 76.3 239 27.6
RcHm_v2.0_Chr1g0344771 Rosa chinensis HOM05D004133 ORTHO05D004683 8.3e-12 76.3 67 77.6
Nitab4.5_0011455g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 1.1e-11 75.9 71 52.1
Peaxi162Scf00259g00213 Petunia axillaris HOM05D004133 ORTHO05D004683 5.9e-10 70.1 113 41.6
Pp3c16_920 Physcomitrium patens HOM05D000371 ORTHO05D001484 1.5e-08 65.5 116 39.7
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 7.2e-08 63.2 120 39.2
MCO02G231 Micromonas commoda HOM05D004133 ORTHO05D004683 9.5e-08 62.8 381 24.4
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.2e-07 62.4 111 41.4
Dinv18869 Davidia involucrata HOM05D004133 ORTHO05D004683 8.0e-07 59.7 51 62.7
EL10Ac2g04343 Beta vulgaris HOM05D005145 ORTHO05D006062 1.0e-06 59.3 64 51.6
AUR62023079 Chenopodium quinoa HOM05D005145 ORTHO05D006062 1.8e-06 58.5 64 51.6
MD07G1015600 Malus domestica HOM05D005145 ORTHO05D006062 1.8e-06 58.5 118 33.9
Hund05940 Selenicereus undatus HOM05D005145 ORTHO05D006062 3.0e-06 57.8 87 42.5
BcaB04g17122 Brassica carinata HOM05D004133 ORTHO05D004683 4.0e-06 57.4 37 73.0
AUR62009396 Chenopodium quinoa HOM05D005145 ORTHO05D006062 4.0e-06 57.4 64 50.0
SalBow2G0762 Salvia bowleyana HOM05D000371 ORTHO05D012546 4.0e-06 57.4 93 36.6
Sed0001128 Sechium edule HOM05D004133 ORTHO05D004683 6.8e-06 56.6 126 35.7


User provided reference genes

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