Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 8.0e-163 577.0 287 100.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 5.9e-142 507.7 287 88.2
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.5e-134 481.5 287 84.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 2.6e-129 465.7 286 82.9
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.4e-127 459.9 286 81.8
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.4e-127 459.1 286 81.8
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 6.4e-112 407.9 288 72.9
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 3.4e-105 385.6 288 69.1
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 3.4e-105 385.6 288 69.1
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.2e-103 379.0 288 66.7
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 7.1e-103 377.9 288 69.4
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.6e-102 376.7 324 63.3
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 3.9e-101 372.1 288 66.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.5e-100 370.2 294 68.4
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.4e-97 359.0 288 66.3
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.7e-96 356.7 288 64.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.4e-96 354.8 265 67.9
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.4e-95 353.6 207 87.0
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 5.1e-93 345.1 288 63.9
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 8.1e-91 337.8 288 60.8
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.5e-89 333.6 299 61.9
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.8e-89 331.6 289 59.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.6e-89 331.3 338 55.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.7e-88 330.1 258 66.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.4e-88 328.2 298 58.1
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 8.4e-88 327.8 296 61.5
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 2.4e-87 326.2 294 58.8
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.2e-87 325.5 290 58.3
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.1e-87 324.7 261 65.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 7.1e-87 324.7 287 59.2
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-86 323.9 386 50.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 7.9e-86 321.2 291 61.2
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 3.0e-85 319.3 288 59.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.9e-84 316.6 261 64.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 9.6e-84 314.3 290 59.0
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.3e-83 313.9 292 57.9
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.6e-83 313.5 308 57.8
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.2e-83 311.6 399 47.1
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 4.0e-82 308.9 289 59.5
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.5e-81 307.0 289 58.1
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.5e-81 307.0 289 58.1
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.4e-79 300.4 290 57.2
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 3.2e-79 299.3 292 57.5
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.2e-79 299.3 287 57.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.6e-78 297.0 298 54.7
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.5e-78 295.8 293 56.7
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.6e-78 295.4 291 57.4
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.0e-78 295.0 316 52.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.0e-78 295.0 316 52.8
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 3.0e-77 292.7 267 58.4
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 6.7e-77 291.6 288 54.9
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.6e-75 287.0 289 56.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 6.5e-72 275.0 295 53.9
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-71 273.9 261 58.2
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.5e-71 273.1 289 55.7
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 5.5e-71 271.9 289 55.4
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 5.5e-71 271.9 292 54.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 5.5e-71 271.9 292 54.1
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 5.5e-71 271.9 288 51.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 9.3e-71 271.2 292 53.8
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 9.3e-71 271.2 292 54.1
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.5e-70 269.2 290 51.0
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.0e-69 267.7 292 53.8
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.8e-69 266.9 211 66.8
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.9e-68 263.5 296 52.7
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.3e-67 260.8 297 48.5
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-67 260.8 302 51.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.3e-67 258.5 300 49.0
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 6.3e-67 258.5 234 59.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 3.1e-66 256.1 292 50.3
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.7e-64 250.4 243 54.7
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.9e-64 249.6 298 51.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 5.0e-64 248.8 296 49.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.9e-63 246.9 243 53.9
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 7.9e-62 241.5 204 62.7
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.4e-61 240.7 300 50.0
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.0e-61 239.6 294 49.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 2.0e-60 236.9 210 59.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.5e-60 236.5 228 55.7
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.2e-59 233.4 294 49.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.4e-58 229.9 289 47.8
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-57 226.9 284 49.6
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 3.4e-57 226.1 281 50.5
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 5.9e-57 225.3 296 43.6
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.0e-56 224.6 297 46.8
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.1e-55 221.1 297 46.8
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 4.2e-55 219.2 298 46.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.4e-55 218.0 288 44.4
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.1e-54 216.9 209 56.0
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 7.9e-54 214.9 166 65.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-53 214.2 267 46.4
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.0e-53 213.0 232 51.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.0e-53 213.0 290 44.5
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.4e-52 208.4 267 45.3
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 4.8e-51 205.7 323 40.9
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.3e-51 205.3 291 44.0
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.1e-50 203.0 241 48.5
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 5.3e-50 202.2 310 42.6
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.5e-49 199.1 283 43.1
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.3e-48 197.6 323 42.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 2.9e-48 196.4 324 42.6
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.8e-48 196.1 271 45.0
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.2e-47 192.6 302 41.7
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 5.5e-47 192.2 373 35.9
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.2e-46 191.0 265 43.4
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.2e-46 191.0 171 60.2
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 6.1e-46 188.7 306 39.2
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.4e-45 187.6 310 41.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 4.4e-44 182.6 349 36.1
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.2e-43 180.3 230 45.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 6.3e-43 178.7 288 40.6
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.6e-41 174.1 290 39.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.5e-39 167.5 327 37.0
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.9e-39 167.2 192 51.0
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 4.2e-39 166.0 248 41.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 8.8e-37 158.3 255 40.8
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.4e-36 156.0 295 35.6
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.5e-36 155.2 224 45.5
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 2.7e-33 146.7 171 53.8
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.0e-32 144.8 301 36.5
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.9e-32 143.3 290 36.9
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.2e-30 137.9 135 53.3
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.0e-29 132.9 144 50.7
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.2e-29 132.5 211 41.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.0e-28 130.6 211 41.2
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 7.5e-28 128.6 329 33.4
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.4e-26 123.6 110 58.2
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 9.1e-26 121.7 129 55.8
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 2.7e-25 120.2 210 39.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 7.7e-25 118.6 211 37.0
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 6.6e-24 115.5 270 34.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 8.0e-22 108.6 83 63.9
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.3e-21 107.1 294 32.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 3.0e-21 106.7 217 34.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 4.0e-21 106.3 222 33.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.5e-20 104.4 191 38.2
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 4.4e-20 102.8 237 35.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.4e-18 97.8 317 27.8
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.2e-17 94.7 308 28.9
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 4.7e-14 82.8 82 51.2
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 2.3e-13 80.5 83 51.8
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 5.8e-12 75.9 101 39.6
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.9e-11 73.6 78 53.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.6e-09 67.8 90 45.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.3e-08 63.9 69 46.4
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 7.3e-07 58.9 165 32.1
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 6.2e-06 55.8 71 45.1


User provided reference genes

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