Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G265400 Theobroma cacao HOM05D000058 ORTHO05D407660 8.6e-66 253.4 123 100.0
Duzib168G0549 Durio zibethinus HOM05D000058 ORTHO05D000077 2.7e-11 72.4 51 68.6
Gorai.009G080300 Gossypium raimondii HOM05D000058 ORTHO05D000077 1.4e-10 70.1 51 64.7
Gohir.D05G078900 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.3e-10 69.3 51 64.7
GSVIVG01031782001 Vitis vinifera HOM05D000058 ORTHO05D000077 5.7e-09 64.7 67 43.3
HanXRQChr03g0072291 Helianthus annuus HOM05D000058 ORTHO05D000077 7.4e-09 64.3 53 52.8
HanXRQChr03g0072301 Helianthus annuus HOM05D000058 ORTHO05D000077 7.4e-09 64.3 62 46.8
DCAR_022043 Daucus carota HOM05D000058 ORTHO05D000077 2.2e-08 62.8 62 48.4
DCAR_022049 Daucus carota HOM05D000058 ORTHO05D000077 2.2e-08 62.8 48 60.4
ECA240G4550 Erigeron canadensis HOM05D000058 ORTHO05D000077 2.2e-08 62.8 48 54.2
ECA240G1713 Erigeron canadensis HOM05D000058 ORTHO05D000077 4.8e-08 61.6 48 54.2
HanXRQChr03g0072231 Helianthus annuus HOM05D000058 ORTHO05D000077 4.8e-08 61.6 62 46.8
GSVIVG01009560001 Vitis vinifera HOM05D000058 ORTHO05D000077 4.8e-08 61.6 49 55.1
DCAR_022044 Daucus carota HOM05D000058 ORTHO05D000077 6.3e-08 61.2 62 45.2
DCAR_022055 Daucus carota HOM05D000058 ORTHO05D000077 8.2e-08 60.8 50 52.0
Dinv35984 Davidia involucrata HOM05D000058 ORTHO05D000077 8.2e-08 60.8 53 45.3
Gohir.D10G023900 Gossypium hirsutum HOM05D000058 ORTHO05D000077 8.2e-08 60.8 67 43.3
Gorai.011G025000 Gossypium raimondii HOM05D000058 ORTHO05D000077 8.2e-08 60.8 67 43.3
MD08G1106600 Malus domestica HOM05D000058 ORTHO05D000077 1.1e-07 60.5 49 53.1
TAR625G1313 Trochodendron aralioides HOM05D000058 ORTHO05D000077 1.1e-07 60.5 74 39.2
TAR381G1640 Trochodendron aralioides HOM05D000058 ORTHO05D000077 1.4e-07 60.1 51 51.0
Aqoxy6G01395 Aquilegia oxysepala HOM05D000058 ORTHO05D018401 1.8e-07 59.7 49 51.0
QL02p006015 Quercus lobata HOM05D000058 ORTHO05D000077 2.4e-07 59.3 51 51.0
TPR.G37928 Trifolium pratense HOM05D000058 ORTHO05D000077 3.1e-07 58.9 71 38.0
MD15G1087200 Malus domestica HOM05D000058 ORTHO05D000077 5.3e-07 58.2 62 41.9
Ciclev10000968m.g Citrus clementina HOM05D000058 ORTHO05D000077 7.0e-07 57.8 49 49.0
HanXRQChr03g0072271 Helianthus annuus HOM05D000058 ORTHO05D000077 7.0e-07 57.8 45 55.6
SalBow6G2228 Salvia bowleyana HOM05D000058 ORTHO05D000077 7.0e-07 57.8 49 49.0
CSS0016061 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 9.1e-07 57.4 48 50.0
CSS0036254 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 9.1e-07 57.4 48 50.0
PSO541G4705 Papaver somniferum HOM05D000058 ORTHO05D000077 9.1e-07 57.4 49 44.9
PSO675G1511 Papaver somniferum HOM05D000058 ORTHO05D000077 9.1e-07 57.4 49 44.9
QL02p005984 Quercus lobata HOM05D000058 ORTHO05D000077 9.1e-07 57.4 51 49.0
C09p68690 Brassica napus HOM05D000058 ORTHO05D000077 1.2e-06 57.0 54 44.4
BolC9t59615H Brassica oleracea HOM05D000058 ORTHO05D000077 1.2e-06 57.0 54 44.4
HanXRQChr12g0366101 Helianthus annuus HOM05D000058 ORTHO05D000077 1.2e-06 57.0 53 47.2
HanXRQChr13g0387611 Helianthus annuus HOM05D000058 ORTHO05D000077 1.2e-06 57.0 48 47.9
Lsat_1_v5_gn_4_124301 Lactuca sativa HOM05D000058 ORTHO05D000077 1.2e-06 57.0 49 49.0
Lsat_1_v5_gn_9_110220 Lactuca sativa HOM05D000058 ORTHO05D000077 1.2e-06 57.0 62 41.9
PSO541G5897 Papaver somniferum HOM05D000058 ORTHO05D000077 1.2e-06 57.0 77 37.7
PSO675G0157 Papaver somniferum HOM05D000058 ORTHO05D000077 1.2e-06 57.0 47 51.1
Potri.005G091700 Populus trichocarpa HOM05D000058 ORTHO05D000077 1.2e-06 57.0 49 46.9
CiPaw.15G063300 Carya illinoinensis HOM05D000058 ORTHO05D000077 1.5e-06 56.6 49 51.0
DCAR_003619 Daucus carota HOM05D000058 ORTHO05D000077 1.5e-06 56.6 62 40.3
Eucgr.F00022 Eucalyptus grandis HOM05D000058 ORTHO05D000077 1.5e-06 56.6 67 43.3
Eucgr.L02059 Eucalyptus grandis HOM05D000058 ORTHO05D000077 1.5e-06 56.6 67 43.3
Hma1.2p1_1589F.1_g292370 Hydrangea macrophylla HOM05D000058 ORTHO05D000077 1.5e-06 56.6 48 50.0
Lj5g0022703 Lotus japonicus HOM05D000058 ORTHO05D000077 1.5e-06 56.6 49 44.9
Manes.11G103100 Manihot esculenta HOM05D000058 ORTHO05D000077 1.5e-06 56.6 49 44.9
PGR142G0801 Punica granatum HOM05D000058 ORTHO05D000077 1.5e-06 56.6 75 40.0
Rhsim07G0231300 Rhododendron simsii HOM05D000058 ORTHO05D000077 1.5e-06 56.6 49 49.0
AL2G15240 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 2.0e-06 56.2 71 42.3
A10p28430 Brassica napus HOM05D000058 ORTHO05D000077 2.0e-06 56.2 54 42.6
BraA10t44890Z Brassica rapa HOM05D000058 ORTHO05D000077 2.0e-06 56.2 54 42.6
Dinv11723 Davidia involucrata HOM05D000058 ORTHO05D000077 2.0e-06 56.2 53 49.1
Gohir.A10G023100 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.0e-06 56.2 67 40.3
HanXRQChr03g0072311 Helianthus annuus HOM05D000058 ORTHO05D000077 2.0e-06 56.2 62 40.3
Lj2C284T0 Lonicera japonica HOM05D000058 ORTHO05D000077 2.0e-06 56.2 67 38.8
Medtr3g079620 Medicago truncatula HOM05D000058 ORTHO05D000077 2.0e-06 56.2 52 44.2
RcHm_v2.0_Chr5g0007541 Rosa chinensis HOM05D000058 ORTHO05D000077 2.0e-06 56.2 68 38.2
ClCG09G004490 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.6e-06 55.8 49 46.9
Gohir.D13G023400 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.6e-06 55.8 52 46.2
Gorai.013G026200 Gossypium raimondii HOM05D000058 ORTHO05D000077 2.6e-06 55.8 52 46.2
HanXRQChr03g0072241 Helianthus annuus HOM05D000058 ORTHO05D000077 2.6e-06 55.8 90 31.1
Lju926A6T26 Lonicera japonica HOM05D000058 ORTHO05D000077 2.6e-06 55.8 49 49.0
Lalb_Chr19g0139451 Lupinus albus HOM05D000058 ORTHO05D000077 2.6e-06 55.8 53 47.2
MBI17_g18129_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 2.6e-06 55.8 49 49.0
Nn4g24962 Nelumbo nucifera HOM05D000058 ORTHO05D000077 2.6e-06 55.8 53 47.2
Os04g0525700 Oryza sativa ssp. japonica HOM05D000058 ORTHO05D000077 2.6e-06 55.8 65 41.5
Prupe.1G441000 Prunus persica HOM05D000058 ORTHO05D000077 2.6e-06 55.8 49 46.9
TPR.G38005 Trifolium pratense HOM05D000058 ORTHO05D000077 2.6e-06 55.8 60 41.7
Zm00001eb076810 Zea mays HOM05D000058 ORTHO05D000077 2.6e-06 55.8 49 49.0
CSS0044552 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 3.4e-06 55.5 52 44.2
CSS0045790 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 3.4e-06 55.5 52 44.2
Dinv39339 Davidia involucrata HOM05D000058 ORTHO05D000077 3.4e-06 55.5 67 40.3
Glyma.17G244900 Glycine max HOM05D000058 ORTHO05D000077 3.4e-06 55.5 49 44.9
Gohir.A13G024500 Gossypium hirsutum HOM05D000058 ORTHO05D000077 3.4e-06 55.5 52 44.2
Phvul.011G028000 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 3.4e-06 55.5 53 47.2
SGA_v2.0_scaffold362G49919 Striga asiatica HOM05D000058 ORTHO05D000077 3.4e-06 55.5 53 49.1
SGA_v2.0_scaffold362G49920 Striga asiatica HOM05D000058 ORTHO05D000077 3.4e-06 55.5 53 49.1
SGA_v2.0_scaffold562G52927 Striga asiatica HOM05D000058 ORTHO05D000077 3.4e-06 55.5 53 49.1
SGA_v2.0_scaffold808G53626 Striga asiatica HOM05D000058 ORTHO05D000077 3.4e-06 55.5 53 49.1
Atru.chr1.1393 Acer truncatum HOM05D000058 ORTHO05D000077 4.5e-06 55.1 53 47.2
Atru.chr11.1147 Acer truncatum HOM05D000058 ORTHO05D000077 4.5e-06 55.1 53 47.2
EL10Ac9g22956 Beta vulgaris HOM05D000058 ORTHO05D000077 4.5e-06 55.1 54 44.4
Duzib150G0212 Durio zibethinus HOM05D000058 ORTHO05D000077 4.5e-06 55.1 51 47.1
Glyma.14G080500 Glycine max HOM05D000058 ORTHO05D000077 4.5e-06 55.1 49 42.9
Medtr1g021010 Medicago truncatula HOM05D000058 ORTHO05D000077 4.5e-06 55.1 49 42.9
Sabra08G0028600 Salix brachista HOM05D000058 ORTHO05D000077 4.5e-06 55.1 48 47.9
Hund18822 Selenicereus undatus HOM05D000058 ORTHO05D000077 4.5e-06 55.1 69 39.1
TAR636G0308 Trochodendron aralioides HOM05D000058 ORTHO05D000077 4.5e-06 55.1 73 39.7
VMungo0647G2549 Vigna mungo HOM05D000058 ORTHO05D000077 4.5e-06 55.1 49 44.9
AT1G61130 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 5.9e-06 54.7 71 42.3
Ciclev10031313m.g Citrus clementina HOM05D000058 ORTHO05D000077 5.9e-06 54.7 53 49.1
DCAR_022054 Daucus carota HOM05D000058 ORTHO05D000077 5.9e-06 54.7 62 43.5
HanXRQChr03g0072251 Helianthus annuus HOM05D000058 ORTHO05D000077 5.9e-06 54.7 49 44.9
Lj3g0016744 Lotus japonicus HOM05D000058 ORTHO05D000077 5.9e-06 54.7 54 42.6
Medtr1g020090 Medicago truncatula HOM05D000058 ORTHO05D000077 5.9e-06 54.7 50 42.0
Medtr3g079600 Medicago truncatula HOM05D000058 ORTHO05D000077 5.9e-06 54.7 49 44.9
Phvul.001G019500 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 5.9e-06 54.7 49 42.9
Sed0008046 Sechium edule HOM05D000058 ORTHO05D000077 5.9e-06 54.7 49 44.9
Solyc01g087950.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 5.9e-06 54.7 50 48.0
Sopen01g034850 Solanum pennellii HOM05D000058 ORTHO05D000077 5.9e-06 54.7 50 48.0
THA.LOC104819147 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 5.9e-06 54.7 61 44.3
Thecc.08G013600 Theobroma cacao HOM05D000058 ORTHO05D000077 5.9e-06 54.7 49 44.9
VMungo1127G0487 Vigna mungo HOM05D000058 ORTHO05D000077 5.9e-06 54.7 53 49.1
ATR0121G002 Amborella trichopoda HOM05D000058 ORTHO05D000077 7.7e-06 54.3 61 41.0
BcaB01g05619 Brassica carinata HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 45.8
BcaB08g37270 Brassica carinata HOM05D000058 ORTHO05D000077 7.7e-06 54.3 65 38.5
BcaNung05096 Brassica carinata HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 45.8
A03p03700 Brassica napus HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 45.8
C03p04190 Brassica napus HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 45.8
C09p68680 Brassica napus HOM05D000058 ORTHO05D000077 7.7e-06 54.3 65 38.5
BolC3t12951H Brassica oleracea HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 45.8
BolC9t59614H Brassica oleracea HOM05D000058 ORTHO05D000077 7.7e-06 54.3 65 38.5
BraA03t09718Z Brassica rapa HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 45.8
CSS0003245 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 7.7e-06 54.3 45 48.9
Ciclev10015024m.g Citrus clementina HOM05D000058 ORTHO05D000077 7.7e-06 54.3 51 45.1
MELO3C023591.2 Cucumis melo HOM05D000058 ORTHO05D000077 7.7e-06 54.3 49 42.9
CsaV3_7G030650 Cucumis sativus L. HOM05D000058 ORTHO05D000077 7.7e-06 54.3 49 44.9
Glyma.12G025600 Glycine max HOM05D000058 ORTHO05D000077 7.7e-06 54.3 53 45.3
Gohir.A07G115100 Gossypium hirsutum HOM05D000058 ORTHO05D000077 7.7e-06 54.3 51 47.1
Medtr1g021020 Medicago truncatula HOM05D000058 ORTHO05D000077 7.7e-06 54.3 50 42.0
RcHm_v2.0_Chr6g0307131 Rosa chinensis HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 47.9
Sp2g03370 Schrenkiella parvula HOM05D000058 ORTHO05D000077 7.7e-06 54.3 67 41.8
Hund19346 Selenicereus undatus HOM05D000058 ORTHO05D000077 7.7e-06 54.3 48 47.9
TPR.G13679 Trifolium pratense HOM05D000058 ORTHO05D000077 7.7e-06 54.3 50 42.0
VMungo1127G1284 Vigna mungo HOM05D000058 ORTHO05D000077 7.7e-06 54.3 45 48.9


User provided reference genes

Program Settings