Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 1.5e-60 236.1 130 100.0
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 3.5e-49 198.4 130 83.1
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 2.4e-42 175.6 134 79.1
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 5.4e-42 174.5 134 79.1
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 9.2e-42 173.7 130 76.2
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 2.1e-38 162.5 112 83.0
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 1.6e-33 146.4 129 63.6
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 3.5e-33 145.2 131 66.4
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 3.5e-33 145.2 131 66.4
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 6.0e-33 144.4 131 66.4
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 6.6e-32 141.0 134 64.9
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 3.3e-31 138.7 131 61.1
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 4.3e-31 138.3 130 63.1
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 9.5e-31 137.1 134 62.7
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 1.2e-30 136.7 131 66.4
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 1.6e-30 136.3 135 61.5
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 2.8e-30 135.6 129 62.8
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 1.4e-29 133.3 131 61.8
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 4.0e-29 131.7 131 60.3
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 2.0e-28 129.4 134 61.9
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 4.4e-28 128.3 157 53.5
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 5.8e-28 127.9 134 59.7
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 5.8e-28 127.9 131 60.3
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 7.5e-28 127.5 134 59.7
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 7.5e-28 127.5 134 59.7
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 9.9e-28 127.1 137 59.9
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 1.7e-27 126.3 111 66.7
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 1.7e-27 126.3 133 60.9
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 1.9e-26 122.9 131 57.3
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 2.4e-26 122.5 134 58.2
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 3.2e-26 122.1 133 59.4
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 9.2e-26 120.6 132 54.5
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 9.2e-26 120.6 132 54.5
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 9.2e-26 120.6 132 54.5
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 9.2e-26 120.6 113 65.5
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 9.2e-26 120.6 132 61.4
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 9.2e-26 120.6 135 58.5
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 1.6e-25 119.8 132 53.8
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 1.6e-25 119.8 132 53.8
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 1.6e-25 119.8 134 57.5
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 2.1e-25 119.4 132 56.8
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 3.5e-25 118.6 131 55.0
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 3.5e-25 118.6 131 59.5
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 4.6e-25 118.2 112 63.4
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 4.6e-25 118.2 134 56.7
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 6.0e-25 117.9 132 55.3
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 1.7e-24 116.3 132 53.8
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 2.3e-24 115.9 132 53.8
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 2.3e-24 115.9 128 54.7
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 2.3e-24 115.9 158 50.0
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 2.3e-24 115.9 134 56.0
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 3.0e-24 115.5 132 56.8
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 5.1e-24 114.8 134 55.2
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 6.6e-24 114.4 132 52.3
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 6.6e-24 114.4 131 54.2
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 8.6e-24 114.0 137 54.7
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 8.6e-24 114.0 133 52.6
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 1.1e-23 113.6 132 53.0
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 1.5e-23 113.2 134 56.0
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 1.5e-23 113.2 133 54.9
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 2.5e-23 112.5 138 52.9
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 2.5e-23 112.5 134 53.7
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 2.5e-23 112.5 114 57.0
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 5.6e-23 111.3 131 56.5
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 7.3e-23 110.9 131 53.4
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 7.3e-23 110.9 113 61.1
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 2.1e-22 109.4 132 53.8
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.8e-22 109.0 136 52.9
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 2.8e-22 109.0 132 53.8
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 4.7e-22 108.2 130 55.4
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 4.7e-22 108.2 114 57.9
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 6.2e-22 107.8 137 54.0
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 6.2e-22 107.8 134 55.2
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 1.8e-21 106.3 135 51.1
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 1.8e-21 106.3 135 51.1
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.8e-21 106.3 156 48.1
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 2.4e-21 105.9 133 51.9
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 2.4e-21 105.9 128 51.6
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 4.0e-21 105.1 112 58.0
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 1.2e-20 103.6 105 57.1
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 1.2e-20 103.6 129 53.5
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 1.5e-20 103.2 131 52.7
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 1.5e-20 103.2 139 53.2
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 2.0e-20 102.8 89 61.8
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 3.4e-20 102.1 119 52.1
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 4.4e-20 101.7 77 68.8
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 5.8e-20 101.3 132 52.3
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 1.3e-19 100.1 113 53.1
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.7e-19 99.8 134 48.5
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 2.9e-19 99.0 131 53.4
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 2.9e-19 99.0 141 52.5
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 3.8e-19 98.6 135 49.6
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 3.8e-19 98.6 129 49.6
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 6.4e-19 97.8 78 69.2
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 6.4e-19 97.8 78 69.2
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 6.4e-19 97.8 111 54.1
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 7.1e-18 94.4 134 48.5
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 2.1e-17 92.8 136 52.2
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 4.6e-17 91.7 135 48.1
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 4.6e-17 91.7 78 69.2
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 4.6e-17 91.7 78 69.2
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 6.0e-17 91.3 92 54.3
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 6.0e-17 91.3 134 47.8
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 6.0e-17 91.3 134 47.0
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 7.3e-15 84.3 71 66.2
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 2.1e-14 82.8 114 46.5
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 3.1e-13 79.0 137 47.4
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 4.6e-09 65.1 74 52.7
Pp3c13_5290 Physcomitrium patens HOM05D007045 ORTHO05D008872 6.0e-09 64.7 132 38.6
Mapoly0084s0018 Marchantia polymorpha HOM05D007045 ORTHO05D008872 1.1e-07 60.5 121 36.4
Pp3c4_15620 Physcomitrium patens HOM05D007045 ORTHO05D008872 3.6e-06 55.5 145 34.5
CBR_g50944 Chara braunii HOM05D007045 ORTHO05D008872 4.8e-06 55.1 121 29.8


User provided reference genes

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