Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 7.1e-281 969.9 486 100.0
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 5.9e-259 897.1 487 92.0
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 4.2e-257 891.0 486 90.9
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 4.8e-245 850.9 486 86.2
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.4e-244 849.4 486 86.4
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 1.8e-244 849.0 486 86.4
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.4e-236 822.8 487 84.2
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 5.2e-231 804.3 486 81.9
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 6.8e-231 803.9 486 81.7
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 5.9e-227 790.8 486 80.2
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 3.8e-226 788.1 488 79.7
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 5.6e-225 784.3 487 80.3
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 4.7e-224 781.2 487 80.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.0e-223 780.0 530 74.5
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 2.3e-223 778.9 487 80.1
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.5e-222 776.2 487 78.6
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.1e-220 770.0 482 79.0
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 9.2e-220 766.9 458 81.2
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 5.9e-219 764.2 487 78.0
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.6e-216 756.1 487 78.9
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 6.8e-215 750.7 488 76.6
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.3e-213 746.5 487 75.4
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 3.7e-213 745.0 493 76.7
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.9e-212 742.7 485 75.9
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 3.2e-212 741.9 487 76.4
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 4.1e-212 741.5 487 74.7
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.1e-212 741.5 487 76.4
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 6.6e-210 734.2 485 75.3
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 5.6e-209 731.1 487 74.3
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 3.6e-208 728.4 486 75.5
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 6.2e-208 727.6 486 73.9
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.4e-207 726.5 507 73.4
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.8e-207 726.1 482 74.5
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.1e-207 725.3 483 74.5
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 5.2e-207 724.5 485 74.2
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 5.2e-207 724.5 487 76.6
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 2.6e-206 722.2 487 73.3
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 4.4e-206 721.5 498 73.5
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 4.4e-206 721.5 487 74.5
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 5.8e-206 721.1 485 74.6
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 9.8e-206 720.3 514 71.6
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.2e-205 719.2 485 73.8
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 2.9e-205 718.8 487 76.0
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 1.9e-204 716.1 482 73.4
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 4.1e-204 714.9 498 71.7
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 7.8e-203 710.7 490 73.1
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 7.8e-203 710.7 483 73.7
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.9e-201 706.1 483 73.5
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.9e-201 706.1 485 72.6
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 8.1e-200 700.7 524 68.1
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 2.3e-199 699.1 484 72.5
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 5.2e-199 698.0 483 72.9
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.0e-198 696.0 540 66.5
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 3.8e-197 691.8 483 72.5
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.4e-196 689.9 488 70.1
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.2e-195 686.8 488 70.1
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 3.5e-195 685.3 493 69.6
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.1e-193 680.2 480 71.2
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.5e-193 679.9 491 69.5
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.6e-192 676.4 489 68.9
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 4.0e-191 671.8 495 69.1
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.2e-191 671.4 480 71.0
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 6.9e-191 671.0 491 68.8
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 8.9e-191 670.6 484 68.6
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 1.5e-190 669.8 491 68.6
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.5e-190 669.8 484 70.0
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 2.6e-190 669.1 491 68.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.6e-190 669.1 491 68.8
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 5.8e-190 667.9 483 68.5
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 9.9e-190 667.2 491 68.6
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.7e-189 666.4 491 68.8
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.7e-189 666.4 484 69.4
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 1.1e-188 663.7 491 68.0
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.2e-188 662.1 484 68.6
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 2.7e-187 659.1 489 69.1
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 3.9e-186 655.2 485 69.7
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.4e-183 646.7 485 66.8
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.4e-183 646.7 484 68.2
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.2e-182 643.7 470 68.7
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 4.9e-181 638.3 490 66.1
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.4e-180 636.0 483 66.9
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.2e-180 635.6 438 72.8
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 5.6e-177 624.8 486 64.4
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 7.4e-177 624.4 483 66.3
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 3.1e-175 619.0 443 71.3
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 6.9e-175 617.8 478 65.9
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 6.9e-175 617.8 482 64.7
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 2.0e-174 616.3 492 64.2
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 7.6e-174 614.4 494 63.0
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.2e-171 607.1 492 61.8
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 2.8e-168 595.9 480 66.0
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.2e-158 563.9 483 60.7
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.0e-157 560.8 388 73.2
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 4.1e-151 538.9 435 62.3
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 2.6e-137 493.0 462 54.1
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.3e-137 492.7 299 78.9
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 3.7e-136 489.2 412 61.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 4.1e-135 485.7 514 52.1
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 7.2e-124 448.4 280 76.8
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 2.4e-119 433.3 489 50.5
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 7.0e-119 431.8 357 59.9
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 9.9e-73 278.5 217 65.4
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.7e-45 185.7 101 85.1
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.4e-44 182.6 101 84.2
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.4e-42 177.6 101 81.2
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.0e-40 172.2 97 81.4
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 2.0e-33 147.9 442 31.7
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.0e-32 143.3 82 79.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.4e-31 141.7 82 80.5
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.4e-25 120.6 111 63.1
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 3.1e-18 97.4 341 27.3
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.1e-15 89.0 47 80.9
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.2e-15 87.4 62 66.1
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.2e-12 79.0 183 31.7
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.5e-12 76.3 64 59.4


User provided reference genes

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