Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 1.3e-82 309.7 156 100.0
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 1.9e-25 119.8 106 64.2
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 2.7e-24 115.9 106 61.3
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 4.7e-24 115.2 100 64.0
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 7.9e-24 114.4 106 60.4
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 7.9e-24 114.4 106 60.4
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 1.4e-23 113.6 108 60.2
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 3.9e-23 112.1 100 61.0
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 2.4e-20 102.8 109 55.0
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 2.4e-20 102.8 106 51.9
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 2.6e-19 99.4 110 51.8
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 5.9e-19 98.2 108 54.6
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 2.9e-18 95.9 109 50.5
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 6.5e-18 94.7 99 58.6
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 6.5e-18 94.7 109 55.0
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 8.5e-18 94.4 107 53.3
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 8.5e-18 94.4 96 56.2
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 1.9e-17 93.2 106 51.9
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 1.9e-17 93.2 104 53.8
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 3.2e-17 92.4 97 54.6
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 4.2e-17 92.0 97 54.6
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 4.2e-17 92.0 107 49.5
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 9.4e-17 90.9 91 56.0
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 1.2e-16 90.5 104 51.0
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 1.6e-16 90.1 115 50.4
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 1.6e-16 90.1 97 55.7
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 2.1e-16 89.7 103 52.4
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 3.6e-16 89.0 111 51.4
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 3.6e-16 89.0 98 54.1
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 3.6e-16 89.0 103 51.5
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 4.7e-16 88.6 96 53.1
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 4.7e-16 88.6 99 53.5
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 8.0e-16 87.8 96 53.1
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 8.0e-16 87.8 162 38.9
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 8.0e-16 87.8 104 51.9
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 8.0e-16 87.8 107 48.6
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 2.3e-15 86.3 99 49.5
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 2.3e-15 86.3 106 49.1
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 3.0e-15 85.9 126 44.4
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 3.9e-15 85.5 94 54.3
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 5.2e-15 85.1 101 54.5
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 6.7e-15 84.7 115 46.1
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 1.1e-14 84.0 96 53.1
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 1.5e-14 83.6 97 49.5
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 2.6e-14 82.8 85 55.3
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 2.6e-14 82.8 100 48.0
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 4.4e-14 82.0 97 51.5
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 9.7e-14 80.9 97 52.6
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 2.8e-13 79.3 96 52.1
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 3.7e-13 79.0 102 50.0
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 4.8e-13 78.6 87 52.9
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 1.4e-12 77.0 100 45.0
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 2.4e-12 76.3 105 48.6
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 3.1e-12 75.9 115 44.3
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 4.1e-12 75.5 96 49.0
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 9.1e-12 74.3 103 47.6
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 2.0e-11 73.2 96 47.9
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 2.6e-11 72.8 96 50.0
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 3.5e-11 72.4 98 49.0
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 4.5e-11 72.0 96 49.0
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 5.9e-11 71.6 106 43.4
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 5.9e-11 71.6 97 48.5
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 7.7e-11 71.2 100 47.0
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.3e-10 70.5 88 46.6
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 1.3e-10 70.5 83 50.6
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 1.7e-10 70.1 81 53.1
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 1.7e-10 70.1 98 46.9
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 3.8e-10 68.9 90 46.7
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 5.0e-10 68.6 90 50.0
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 8.5e-10 67.8 131 37.4
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 1.1e-09 67.4 97 45.4
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 1.1e-09 67.4 70 50.0
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 1.5e-09 67.0 102 45.1
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 1.5e-09 67.0 96 47.9
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 1.9e-09 66.6 96 45.8
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 2.5e-09 66.2 85 48.2
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 2.5e-09 66.2 107 44.9
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 2.5e-09 66.2 109 44.0
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 3.2e-09 65.9 98 45.9
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 3.2e-09 65.9 98 45.9
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 4.2e-09 65.5 95 45.3
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 4.2e-09 65.5 94 46.8
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 5.5e-09 65.1 98 45.9
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 5.5e-09 65.1 98 45.9
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 5.5e-09 65.1 101 50.5
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 1.6e-08 63.5 61 57.4
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 2.7e-08 62.8 95 46.3
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 4.7e-08 62.0 99 43.4
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 4.7e-08 62.0 94 43.6
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 4.7e-08 62.0 94 43.6
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 4.7e-08 62.0 86 47.7
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 6.1e-08 61.6 85 45.9
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 8.0e-08 61.2 94 43.6
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 8.0e-08 61.2 94 43.6
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 8.0e-08 61.2 99 44.4
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 3.0e-07 59.3 61 57.4
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 5.2e-07 58.5 99 44.4
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 7.5e-06 54.7 104 39.4


User provided reference genes

Program Settings