Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 2689.4 1401 100.0
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2460.3 1401 91.0
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2370.1 1401 87.3
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2363.6 1401 87.0
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2335.5 1401 86.2
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 2229.5 1312 88.0
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2098.9 1395 76.8
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2086.2 1395 76.7
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2085.8 1393 76.7
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2083.5 1393 76.7
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2078.1 1399 76.1
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2072.0 1402 75.3
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2067.4 1395 76.4
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2067.4 1452 74.2
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2057.0 1402 75.4
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2053.5 1397 74.7
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2046.2 1402 75.8
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2030.0 1394 74.8
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2018.0 1399 74.3
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2009.2 1396 73.6
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 1987.2 1399 73.5
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 1958.0 1392 71.5
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 1946.4 1402 70.8
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 1944.1 1401 70.4
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1943.7 1394 71.7
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 1939.5 1391 72.1
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1932.9 1394 71.4
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 1932.5 1397 71.3
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1931.4 1393 70.7
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 1931.0 1391 71.7
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 1928.7 1393 70.6
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 1927.5 1395 69.7
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1925.6 1397 71.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1922.5 1385 72.3
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1920.6 1391 70.5
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1918.7 1391 70.5
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1915.6 1398 70.8
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 1914.8 1391 71.2
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 1906.3 1391 70.7
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 1900.9 1403 69.4
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 1891.3 1395 70.3
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1889.4 1395 70.5
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 1887.1 1398 68.2
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 1886.7 1398 68.0
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 1886.7 1405 68.9
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 1885.5 1394 68.0
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 1882.5 1433 69.1
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 1880.5 1395 70.0
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1879.8 1398 67.7
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 1879.4 1398 67.5
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 1879.0 1398 67.8
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1876.7 1395 69.8
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1875.9 1392 69.5
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 1875.1 1402 68.3
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 1875.1 1412 67.3
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1874.8 1400 67.6
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 1870.9 1402 67.7
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 1867.8 1394 68.1
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 1866.3 1394 67.6
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 1865.1 1395 67.6
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 1864.4 1403 67.2
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 1864.0 1392 70.0
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 1862.8 1399 67.5
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 1862.4 1401 69.2
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 1859.0 1395 68.4
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1858.6 1394 68.9
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1856.3 1395 68.7
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 1855.5 1402 67.3
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 1847.0 1402 67.1
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 1845.1 1947 53.6
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1840.9 1402 68.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1838.9 1399 68.0
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1823.9 1402 67.8
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 1823.5 1408 66.0
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 1818.1 1408 65.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1811.2 1348 70.8
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 1804.6 1426 65.1
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 1799.6 1374 68.6
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 1791.9 1568 61.2
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 1720.7 1479 62.5
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1714.9 1220 70.7
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 1711.8 1387 63.8
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1706.8 1219 71.9
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1697.6 1341 67.1
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1585.9 1397 59.5
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1528.5 1152 68.1
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1496.1 1105 70.0
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1439.9 1410 55.4
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1258.0 1457 47.2
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1237.2 1450 47.7
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1201.4 1053 60.0
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1190.3 1461 45.4
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1156.0 906 63.8
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1126.3 1205 50.2
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 1.5e-299 1033.5 807 68.8
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.3e-294 1015.4 886 59.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 3.5e-256 889.4 636 71.7
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 4.2e-249 865.9 927 53.7
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 6.3e-237 825.5 698 61.6
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 4.0e-215 753.1 498 76.9
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 2.2e-213 747.3 600 66.0
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.3e-210 738.0 1220 37.2
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 4.1e-196 689.9 1293 34.6
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 1.2e-179 635.2 1257 34.3
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-161 575.5 451 67.2
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 6.2e-152 543.1 347 77.8
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 8.1e-136 489.6 315 75.9
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 5.5e-124 450.3 482 50.2
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.1e-113 416.0 687 36.8
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.7e-101 375.6 1081 27.2
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.0e-82 311.6 281 58.0
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.4e-79 302.8 161 90.1
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.3e-69 268.9 343 43.4
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.6e-60 237.7 258 50.8
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.4e-50 206.5 147 66.7
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 9.6e-44 183.7 130 72.3
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 5.2e-42 177.9 183 57.9
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 1.5e-41 176.4 183 57.4
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 5.4e-39 167.9 217 41.9
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 7.1e-39 167.5 413 31.7
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 1.0e-37 163.7 167 58.1
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 5.6e-36 157.9 180 47.2
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 5.3e-34 151.4 143 52.4
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.4e-32 144.4 256 36.3
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 9.3e-31 140.6 153 55.6
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 6.2e-27 127.9 176 40.3
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 2.0e-25 122.9 84 72.6
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.4e-25 122.1 92 65.2
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.9e-25 120.6 145 46.2
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 3.2e-23 115.5 73 78.1
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.1e-21 108.2 81 63.0
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 3.3e-20 105.5 171 39.2
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 4.3e-20 105.1 92 60.9
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.6e-19 103.2 196 31.1
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 6.5e-16 91.3 70 68.6
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 7.9e-14 84.3 55 69.1
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 8.7e-13 80.9 72 52.8
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.4e-10 72.8 115 34.8
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.8e-08 65.5 47 59.6
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.5e-08 64.7 47 61.7
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.2e-06 60.5 38 76.3
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 4.6e-06 58.5 32 93.8


User provided reference genes

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