Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 9.2e-33 144.1 74 100.0
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 4.4e-27 125.2 74 89.2
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 1.6e-24 116.7 74 86.5
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 1.5e-22 110.2 68 86.8
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 4.7e-21 105.1 73 74.0
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 6.2e-21 104.8 67 82.1
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 6.2e-21 104.8 67 82.1
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.8e-20 103.2 72 73.6
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 6.8e-20 101.3 72 76.4
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.5e-19 100.1 72 72.2
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.6e-19 99.4 73 75.3
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 7.5e-19 97.8 67 76.1
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 9.8e-19 97.4 72 75.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 9.8e-19 97.4 72 69.4
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 2.2e-18 96.3 72 69.4
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 2.9e-18 95.9 71 70.4
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 2.9e-18 95.9 72 68.1
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 2.9e-18 95.9 72 68.1
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 4.9e-18 95.1 60 83.3
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 1.4e-17 93.6 83 62.7
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 1.9e-17 93.2 61 78.7
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 1.9e-17 93.2 72 69.4
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 3.2e-17 92.4 64 73.4
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 5.4e-17 91.7 70 70.0
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 5.4e-17 91.7 73 68.5
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 7.1e-17 91.3 67 73.1
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 7.1e-17 91.3 72 70.8
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 7.1e-17 91.3 71 67.6
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 9.2e-17 90.9 72 65.3
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.2e-16 90.5 71 71.8
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 1.6e-16 90.1 70 68.6
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 1.6e-16 90.1 64 73.4
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 2.1e-16 89.7 73 67.1
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 2.7e-16 89.4 64 71.9
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 2.7e-16 89.4 67 68.7
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 4.6e-16 88.6 67 70.1
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 4.6e-16 88.6 67 70.1
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 4.6e-16 88.6 61 72.1
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 7.8e-16 87.8 60 76.7
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 1.0e-15 87.4 72 66.7
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 1.0e-15 87.4 72 65.3
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.7e-15 86.7 72 66.7
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 1.7e-15 86.7 64 70.3
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 1.7e-15 86.7 60 76.7
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 2.3e-15 86.3 70 64.3
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 2.3e-15 86.3 71 67.6
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 2.3e-15 86.3 73 64.4
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 3.0e-15 85.9 62 75.8
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 5.1e-15 85.1 72 66.7
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 5.1e-15 85.1 65 70.8
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 5.1e-15 85.1 73 63.0
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 6.6e-15 84.7 60 73.3
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 6.6e-15 84.7 59 76.3
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 8.6e-15 84.3 58 72.4
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.1e-14 84.0 71 62.0
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 1.1e-14 84.0 71 64.8
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.1e-14 84.0 74 62.2
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 1.5e-14 83.6 72 61.1
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 1.9e-14 83.2 66 66.7
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.9e-14 83.2 66 66.7
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.5e-14 82.8 66 66.7
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 3.3e-14 82.4 67 67.2
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 3.3e-14 82.4 67 67.2
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 3.3e-14 82.4 67 67.2
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 4.3e-14 82.0 66 65.2
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 7.3e-14 81.3 55 74.5
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 7.3e-14 81.3 67 70.1
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 9.5e-14 80.9 70 62.9
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 9.5e-14 80.9 73 57.5
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.2e-13 80.5 51 76.5
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 1.2e-13 80.5 67 61.2
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.2e-13 80.5 65 69.2
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 2.1e-13 79.7 55 74.5
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 3.6e-13 79.0 54 75.9
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 6.2e-13 78.2 72 63.9
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 6.2e-13 78.2 73 64.4
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 6.2e-13 78.2 66 68.2
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 6.2e-13 78.2 71 59.2
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.1e-12 77.4 68 60.3
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 1.1e-12 77.4 61 65.6
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 1.8e-12 76.6 88 51.1
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 2.3e-12 76.3 62 69.4
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 2.3e-12 76.3 51 74.5
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 4.0e-12 75.5 75 54.7
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 8.9e-12 74.3 65 63.1
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 8.9e-12 74.3 74 55.4
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 1.2e-11 73.9 58 72.4
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 4.4e-11 72.0 64 65.6
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 1.3e-10 70.5 59 62.7
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 2.2e-10 69.7 65 63.1
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 6.4e-10 68.2 55 63.6
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.1e-09 67.4 50 76.0
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 4.1e-09 65.5 55 67.3
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 1.2e-08 63.9 55 56.4
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 1.6e-08 63.5 62 50.0
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 2.3e-07 59.7 41 70.7
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 3.0e-07 59.3 48 58.3
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 3.9e-07 58.9 46 67.4
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 1.1e-06 57.4 46 65.2


User provided reference genes

Program Settings