Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 1.3e-227 792.7 407 100.0
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 9.7e-114 414.5 414 60.9
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 4.8e-113 412.1 414 60.6
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 2.4e-112 409.8 414 60.6
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 8.5e-94 348.2 431 54.8
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 3.5e-79 299.7 409 44.7
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 5.9e-79 298.9 413 45.8
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 1.1e-72 278.1 413 45.0
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.3e-70 270.4 401 44.6
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 4.0e-67 259.6 418 42.8
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.9e-65 253.4 398 41.0
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 3.7e-65 253.1 422 42.7
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 1.4e-64 251.1 415 43.9
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 1.4e-64 251.1 404 43.3
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 4.1e-64 249.6 431 40.6
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 5.1e-54 216.1 420 41.2
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 2.3e-51 207.2 408 39.7
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 5.2e-51 206.1 398 40.5
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 4.4e-50 203.0 415 36.9
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 5.8e-50 202.6 447 40.3
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 2.4e-48 197.2 411 38.4
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 1.3e-46 191.4 440 37.5
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 6.6e-46 189.1 385 37.7
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 1.5e-45 188.0 407 36.1
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 9.6e-45 185.3 401 34.9
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 1.2e-44 184.9 355 40.8
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 1.1e-43 181.8 410 35.6
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 2.4e-40 170.6 395 37.0
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 3.2e-40 170.2 359 36.8
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 7.1e-40 169.1 377 36.9
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 3.0e-38 163.7 405 33.6
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 4.8e-36 156.4 406 33.3
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 1.1e-35 155.2 407 33.4
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 1.2e-34 151.8 268 41.0
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 7.6e-34 149.1 358 37.2
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 2.9e-33 147.1 387 34.9
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 3.8e-33 146.7 399 33.1
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 6.4e-33 146.0 427 32.8
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 8.4e-33 145.6 417 32.4
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 1.4e-32 144.8 414 34.1
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 2.4e-32 144.1 427 32.8
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 7.1e-32 142.5 393 33.8
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.7e-31 140.6 417 33.6
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.9e-30 136.7 417 33.3
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 6.6e-30 136.0 398 32.9
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 7.3e-29 132.5 398 31.2
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 1.6e-28 131.3 419 33.7
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 2.8e-28 130.6 419 31.7
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 2.8e-28 130.6 405 32.1
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 6.2e-28 129.4 227 42.3
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 8.1e-28 129.0 213 40.4
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 8.1e-28 129.0 420 32.1
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.8e-27 127.9 400 32.0
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 3.1e-27 127.1 142 50.0
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 5.3e-27 126.3 399 32.8
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 5.3e-27 126.3 396 31.6
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.2e-26 125.2 408 31.1
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 7.6e-26 122.5 402 30.6
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 6.4e-25 119.4 191 42.4
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 6.4e-25 119.4 231 38.1
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 8.4e-25 119.0 400 30.5
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 8.4e-25 119.0 404 30.0
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 1.4e-24 118.2 405 30.1
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 1.4e-24 118.2 395 32.4
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 1.9e-24 117.9 400 30.2
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 6.0e-23 112.8 357 33.3
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 7.9e-23 112.5 390 30.3
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 1.0e-22 112.1 397 29.2
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 1.8e-22 111.3 392 31.1
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 3.9e-22 110.2 220 39.1
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 2.1e-20 104.4 170 41.8
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 4.8e-20 103.2 305 33.8
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 8.1e-20 102.4 295 32.9
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 1.1e-19 102.1 81 63.0
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 2.9e-17 94.0 193 37.8
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 5.5e-16 89.7 198 37.4
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 6.0e-15 86.3 264 30.3
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 8.7e-14 82.4 199 32.7
C03p32340 Brassica napus HOM05D001841 ORTHO05D001767 1.5e-13 81.6 214 34.1
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 1.5e-13 81.6 218 34.9
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.9e-13 81.3 216 34.7
A03p26960 Brassica napus HOM05D001841 ORTHO05D001767 1.9e-13 81.3 218 34.9
BolC3t15576H Brassica oleracea HOM05D001841 ORTHO05D001767 4.3e-13 80.1 199 34.2
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 9.6e-13 79.0 199 34.7
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 3.7e-12 77.0 226 32.3
Carub.0004s0670 Capsella rubella HOM05D001841 ORTHO05D001767 4.8e-12 76.6 214 33.6
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 4.8e-12 76.6 201 30.8
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 1.1e-11 75.5 108 47.2
AL4G19390 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 1.4e-11 75.1 216 32.9
Cpa.g.sc376.7 Carica papaya HOM05D001841 ORTHO05D001767 3.1e-11 73.9 262 31.3
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 4.1e-11 73.6 351 28.5
Duzib093G1523 Durio zibethinus HOM05D001841 ORTHO05D001767 6.9e-11 72.8 210 32.9
Gorai.009G209200 Gossypium raimondii HOM05D001841 ORTHO05D001767 9.0e-11 72.4 258 29.8
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 1.2e-10 72.0 205 31.7
Gohir.A05G199948 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.2e-10 72.0 215 33.5
Aqoxy6G01410 Aquilegia oxysepala HOM05D001841 ORTHO05D001767 2.0e-10 71.2 110 37.3
Gohir.D05G203200 Gossypium hirsutum HOM05D001841 ORTHO05D001767 2.6e-10 70.9 266 30.1
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 2.6e-10 70.9 214 34.1
AT2G26530 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 4.5e-10 70.1 214 31.8
Sp4g07730 Schrenkiella parvula HOM05D001841 ORTHO05D001767 4.5e-10 70.1 222 28.4
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 5.8e-10 69.7 214 30.8
MBI02_g21198_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 7.6e-10 69.3 111 40.5
Thecc.08G013800 Theobroma cacao HOM05D001841 ORTHO05D001767 7.6e-10 69.3 252 30.2
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 1.3e-09 68.6 210 31.9
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 1.7e-09 68.2 214 31.3
FvH4_2g06670 Fragaria vesca HOM05D001841 ORTHO05D001767 1.7e-09 68.2 240 31.2
FAN15G3466 Fragaria x ananassa HOM05D001841 ORTHO05D001767 3.8e-09 67.0 240 31.2
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 5.0e-09 66.6 214 28.5
FAN20G1156 Fragaria x ananassa HOM05D001841 ORTHO05D001767 5.0e-09 66.6 240 30.8
FAN24G1402 Fragaria x ananassa HOM05D001841 ORTHO05D001767 5.0e-09 66.6 240 31.2
Oeu009759.1 Olea europaea HOM05D001841 ORTHO05D001767 5.0e-09 66.6 91 44.0
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 5.0e-09 66.6 308 25.3
Cc02_g18570 Coffea canephora HOM05D001841 ORTHO05D001767 8.4e-09 65.9 119 41.2
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 8.4e-09 65.9 224 30.8
PGSC0003DMG400018102 Solanum tuberosum HOM05D001841 ORTHO05D001767 8.4e-09 65.9 287 27.2
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 1.1e-08 65.5 109 36.7
Dinv42133 Davidia involucrata HOM05D001841 ORTHO05D001767 2.5e-08 64.3 144 36.1
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 2.5e-08 64.3 199 32.2
Atru.chr13.625 Acer truncatum HOM05D001841 ORTHO05D001767 3.2e-08 63.9 237 28.7
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 3.2e-08 63.9 220 31.4
Potri.002G128500 Populus trichocarpa HOM05D001841 ORTHO05D001767 4.2e-08 63.5 209 33.5
Gohir.A03G087800 Gossypium hirsutum HOM05D001841 ORTHO05D001767 5.5e-08 63.2 239 28.9
Eucgr.I01168 Eucalyptus grandis HOM05D001841 ORTHO05D001767 7.1e-08 62.8 194 29.9
Gohir.D02G092900 Gossypium hirsutum HOM05D001841 ORTHO05D001767 7.1e-08 62.8 239 28.9
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 9.3e-08 62.4 300 29.3
Lsat_1_v5_gn_5_113300 Lactuca sativa HOM05D001841 ORTHO05D001767 1.6e-07 61.6 174 32.8
Rhsim05G0081500 Rhododendron simsii HOM05D001841 ORTHO05D001767 1.6e-07 61.6 141 31.2
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.6e-07 61.6 155 34.2
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 2.1e-07 61.2 210 32.9
Actinidia27944 Actinidia chinensis HOM05D000058 ORTHO05D001767 2.7e-07 60.8 204 28.4
Gorai.005G104600 Gossypium raimondii HOM05D001841 ORTHO05D001767 2.7e-07 60.8 245 28.6
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 2.7e-07 60.8 204 29.4
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 2.7e-07 60.8 214 30.4
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 3.5e-07 60.5 214 27.1
TWI36G0039 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 3.5e-07 60.5 182 33.0
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 4.6e-07 60.1 278 28.1
THA.LOC104803686 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 4.6e-07 60.1 208 27.9
Duzib116G0233 Durio zibethinus HOM05D001841 ORTHO05D001767 6.1e-07 59.7 207 30.9
Oeu013688.1 Olea europaea HOM05D001841 ORTHO05D001767 6.1e-07 59.7 99 40.4
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 7.9e-07 59.3 212 32.1
Nitab4.5_0001899g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 7.9e-07 59.3 93 40.9
Manes.18G034400 Manihot esculenta HOM05D001841 ORTHO05D001767 1.0e-06 58.9 222 30.2
Nitab4.5_0004334g0030 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.8e-06 58.2 97 40.2
RcHm_v2.0_Chr6g0258711 Rosa chinensis HOM05D001841 ORTHO05D001767 1.8e-06 58.2 124 34.7
CAN.G1166.17 Capsicum annuum HOM05D001841 ORTHO05D001767 2.3e-06 57.8 270 27.0
PSO541G1997 Papaver somniferum HOM05D001841 ORTHO05D001767 2.3e-06 57.8 214 30.8
QL02p006055 Quercus lobata HOM05D001841 ORTHO05D001767 2.3e-06 57.8 210 31.0
DCAR_029019 Daucus carota HOM05D001841 ORTHO05D001767 3.0e-06 57.4 105 38.1
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 3.0e-06 57.4 278 27.3
AUR62011434 Chenopodium quinoa HOM05D001841 ORTHO05D001767 3.9e-06 57.0 236 29.2
PGR083G2104 Punica granatum HOM05D001841 ORTHO05D001767 3.9e-06 57.0 142 33.8
Sc08g0000020 Simmondsia chinensis HOM05D001841 ORTHO05D001767 3.9e-06 57.0 205 28.8
vmacro04468 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 3.9e-06 57.0 248 26.6
Glyma.02G134500 Glycine max HOM05D001841 ORTHO05D001767 5.1e-06 56.6 220 31.4
TWI56G0311 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 6.7e-06 56.2 103 39.8
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 8.7e-06 55.8 224 28.1
AUR62016627 Chenopodium quinoa HOM05D001841 ORTHO05D001767 8.7e-06 55.8 189 27.5
COL.COLO4_26453 Corchorus olitorius HOM05D001841 ORTHO05D001767 8.7e-06 55.8 137 36.5
Duzib132G0939 Durio zibethinus HOM05D001841 ORTHO05D001767 8.7e-06 55.8 191 30.9
Migut.N02690 Erythranthe guttata HOM05D001841 ORTHO05D001767 8.7e-06 55.8 218 28.0
QL11p037275 Quercus lobata HOM05D001841 ORTHO05D001767 8.7e-06 55.8 119 33.6


User provided reference genes

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