Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 3.6e-152 541.6 277 100.0
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 5.6e-121 438.0 278 83.1
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 6.0e-107 391.3 277 76.2
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.9e-105 386.3 277 75.1
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 1.9e-105 386.3 277 75.1
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 1.8e-87 326.6 274 63.9
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 9.0e-87 324.3 285 60.7
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 1.5e-86 323.6 276 63.8
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 9.9e-86 320.9 271 59.8
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 3.5e-83 312.4 266 62.4
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 3.5e-83 312.4 277 60.6
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 7.9e-83 311.2 270 61.9
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 1.0e-82 310.8 243 64.6
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 1.0e-82 310.8 274 65.7
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 5.1e-82 308.5 286 58.4
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 1.9e-81 306.6 265 68.3
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 4.3e-81 305.4 292 58.6
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 1.6e-80 303.5 260 61.5
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 1.6e-80 303.5 213 67.6
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 1.1e-79 300.8 266 59.0
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 2.4e-79 299.7 254 63.0
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 3.1e-79 299.3 212 68.9
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 3.1e-79 299.3 210 70.5
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 9.0e-79 297.7 239 63.2
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 2.0e-78 296.6 344 52.3
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 4.5e-78 295.4 280 56.4
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 5.8e-78 295.0 274 56.2
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 5.8e-78 295.0 266 59.8
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 8.4e-77 291.2 273 58.6
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.1e-76 290.8 279 55.2
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 1.1e-76 290.8 177 78.0
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.4e-76 290.4 204 71.6
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 5.5e-76 288.5 255 59.6
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 7.1e-76 288.1 239 62.8
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 9.3e-76 287.7 259 62.2
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 1.2e-75 287.3 260 60.4
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 1.6e-75 287.0 214 66.4
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 1.6e-75 287.0 274 58.0
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 1.6e-75 287.0 274 58.0
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 2.7e-75 286.2 266 57.1
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 6.0e-75 285.0 232 61.6
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 1.0e-74 284.3 262 61.5
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 2.3e-74 283.1 193 71.0
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 2.3e-74 283.1 257 60.3
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.3e-74 283.1 257 60.7
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.9e-74 282.3 257 60.7
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 3.9e-74 282.3 267 56.9
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 6.7e-74 281.6 253 60.9
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 6.7e-74 281.6 248 60.9
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 8.7e-74 281.2 266 59.4
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 1.1e-73 280.8 252 58.3
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 1.1e-73 280.8 287 54.7
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 1.5e-73 280.4 204 66.2
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 7.4e-73 278.1 247 61.9
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 9.6e-73 277.7 261 57.5
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.6e-72 276.9 277 54.2
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 2.1e-72 276.6 266 56.0
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 3.7e-72 275.8 274 56.2
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 3.7e-72 275.8 207 64.3
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.1e-71 274.2 247 60.3
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 1.8e-71 273.5 201 69.2
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 1.8e-71 273.5 289 57.1
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 2.4e-71 273.1 269 59.1
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 5.3e-71 271.9 252 59.5
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 6.9e-71 271.6 193 70.5
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 9.0e-71 271.2 260 57.7
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 1.2e-70 270.8 257 58.8
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 2.0e-70 270.0 276 55.4
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 2.0e-70 270.0 212 63.2
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 3.4e-70 269.2 265 57.0
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 3.4e-70 269.2 307 50.5
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 5.8e-70 268.5 253 60.1
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 2.2e-69 266.5 253 59.7
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 2.9e-69 266.2 277 51.6
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 3.8e-69 265.8 251 60.2
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 4.9e-69 265.4 246 56.5
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 6.5e-69 265.0 255 59.6
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 1.4e-68 263.8 248 60.1
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 2.5e-68 263.1 216 61.6
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 4.2e-68 262.3 248 59.7
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 4.2e-68 262.3 322 51.2
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 5.5e-68 261.9 191 66.0
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 2.7e-67 259.6 253 56.1
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 3.5e-67 259.2 257 56.0
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.8e-66 256.9 172 72.1
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 5.1e-66 255.4 158 80.4
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.5e-65 253.8 317 47.0
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 5.7e-65 251.9 248 54.0
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.8e-64 249.6 289 50.2
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 5.9e-62 241.9 416 38.9
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.7e-59 233.0 228 57.0
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 6.3e-56 221.9 278 51.8
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 8.5e-53 211.5 195 56.9
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 2.5e-52 209.9 194 56.2
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 1.8e-50 203.8 175 54.3
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 2.0e-49 200.3 262 48.1
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 5.7e-49 198.7 189 50.8
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 1.2e-46 191.0 161 54.0
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 6.5e-45 185.3 240 43.8
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.5e-41 174.1 185 54.1
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 7.2e-36 155.2 188 44.1
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 3.3e-33 146.4 97 72.2
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 1.0e-29 134.8 146 54.1
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.2e-29 133.7 290 37.6
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 3.8e-29 132.9 160 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 7.2e-28 128.6 121 55.4
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 8.0e-27 125.2 150 50.7
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 1.8e-26 124.0 192 43.2
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 4.4e-25 119.4 188 39.9
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 7.7e-22 108.6 168 41.7
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 1.0e-21 108.2 166 47.6
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 7.7e-14 82.0 91 48.4
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 5.6e-12 75.9 67 56.7
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 1.2e-11 74.7 125 42.4
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 3.6e-11 73.2 102 39.2
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 9.8e-09 65.1 76 52.6


User provided reference genes

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