Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.2e-235 818.5 402 100.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 8.1e-230 800.0 402 96.8
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.9e-227 791.6 402 96.3
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.9e-227 790.8 402 94.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 6.4e-227 790.4 402 94.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.2e-226 787.7 402 94.5
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.1e-225 785.4 402 95.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.1e-225 785.4 402 95.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 2.1e-225 785.4 402 94.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.6e-224 780.4 402 94.8
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 5.6e-223 777.3 402 93.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.1e-221 773.1 402 92.8
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.4e-221 772.7 402 92.5
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 93.0
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 93.3
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 93.0
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 4.0e-221 771.2 402 92.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 5.3e-221 770.8 402 92.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 9.0e-221 770.0 402 92.8
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 9.0e-221 770.0 402 93.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 91.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.0
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.3
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 4.4e-220 767.7 402 91.0
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 7.6e-220 766.9 402 91.8
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.3e-219 766.1 401 91.0
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 92.0
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 91.3
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 91.3
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 3.8e-219 764.6 402 91.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.0
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.5
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 91.5
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 90.5
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 90.3
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 90.5
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 90.3
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 90.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 91.0
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 89.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 89.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.8
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 91.3
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.5
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 89.8
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 88.6
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 88.6
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 88.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 88.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 88.1
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 88.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 88.6
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 90.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.3
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 89.3
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 87.8
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.3
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.3
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 89.3
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 88.1
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.2e-212 743.0 411 87.1
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 87.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.6
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.3
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.1
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 87.8
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 87.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 88.3
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 88.3
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 88.8
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 89.6
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 2.6e-212 741.9 402 88.1
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.6e-212 741.9 416 86.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 7.6e-212 740.3 416 86.5
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.8
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 89.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 87.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 2.9e-211 738.4 429 84.8
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 87.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 6.4e-211 737.3 396 89.4
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 86.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 87.3
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.4e-210 736.1 417 85.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.1e-209 732.3 438 81.5
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 88.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.6
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 2.1e-206 722.2 401 86.0
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.8e-206 721.8 400 86.5
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 87.3
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 3.1e-205 718.4 441 80.0
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 6.9e-205 717.2 419 85.2
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 4.9e-203 711.1 402 85.1
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.1e-202 709.9 402 82.8
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.8e-200 702.6 402 83.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.5e-199 698.7 375 89.1
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.3e-198 696.4 402 84.8
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.4e-194 682.9 402 83.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 5.5e-194 681.0 402 81.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 7.9e-193 677.2 357 89.6
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 1.8e-192 676.0 402 80.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.0e-192 675.2 402 80.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 5.7e-191 671.0 402 80.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.5e-188 662.9 360 88.1
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.0e-187 660.2 361 87.8
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.1e-183 646.7 402 79.6
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.5e-180 636.3 334 91.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 3.8e-179 631.7 340 89.1
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 7.9e-177 624.0 402 73.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.3e-176 622.5 401 72.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.8e-174 615.5 402 71.9
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 9.1e-173 610.5 402 75.6
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 9.1e-173 610.5 403 71.0
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 3.5e-172 608.6 402 70.9
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.8e-171 605.1 403 71.0
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.0e-163 580.5 402 68.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 6.5e-163 577.8 401 67.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.8e-160 567.4 403 67.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 3.6e-153 545.4 289 90.0
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 8.6e-147 524.2 403 68.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 8.9e-144 514.2 419 64.2
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.5e-138 496.9 402 64.9
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 8.1e-129 464.5 259 84.9
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 3.1e-120 436.0 394 53.6
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.3e-115 420.6 395 54.4
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.3e-114 415.6 276 75.7
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.0e-104 382.5 229 81.7
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 3.4e-103 379.4 219 84.5
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 5.8e-103 378.6 219 84.5
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 9.9e-103 377.9 219 83.6
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.9e-82 310.5 300 53.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.5e-82 310.1 160 91.9
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 7.6e-79 298.5 167 86.8
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 3.1e-56 223.4 116 93.1
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 7.5e-34 149.1 86 83.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 7.8e-31 139.0 351 29.1
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.9e-29 134.4 351 26.2
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.4e-16 91.7 47 89.4
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.7e-14 84.7 45 80.0
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 5.6e-13 79.7 72 58.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-11 75.1 316 24.1
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.3e-06 58.5 355 21.4


User provided reference genes

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