Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.8e-168 595.9 306 100.0
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.4e-133 479.9 306 79.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.8e-133 479.6 306 79.7
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.5e-130 468.0 306 77.8
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 4.0e-128 461.8 284 82.4
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.2e-119 433.7 308 75.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 3.5e-108 395.6 284 73.2
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 7.3e-106 387.9 309 71.2
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 6.8e-104 381.3 308 68.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 2.8e-89 332.8 312 58.3
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.8e-86 322.4 327 56.3
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.9e-86 322.0 329 56.2
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 3.3e-82 309.3 312 55.4
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 4.3e-82 308.9 311 55.0
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 3.6e-81 305.8 319 54.5
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 8.1e-81 304.7 313 56.2
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 1.4e-80 303.9 313 55.3
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 9.9e-79 297.7 311 52.7
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 2.9e-78 296.2 307 52.8
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.9e-78 296.2 314 51.3
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 6.4e-78 295.0 312 52.6
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.2e-76 290.8 312 54.2
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-75 287.3 301 53.2
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.8e-75 287.0 312 51.9
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 3.9e-75 285.8 309 52.4
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.5e-74 283.9 314 53.2
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 6.9e-72 275.0 313 52.1
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 3.4e-71 272.7 314 48.4
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.3e-70 270.8 309 50.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 4.9e-70 268.9 315 50.5
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.4e-69 267.3 312 49.7
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.3e-67 260.8 305 49.2
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 6.7e-67 258.5 312 50.3
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 4.3e-66 255.8 306 48.0
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 9.6e-66 254.6 313 48.2
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 9.6e-66 254.6 307 49.2
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.1e-64 251.1 316 48.7
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.4e-64 250.8 310 48.1
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.8e-64 250.4 307 46.3
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 1.8e-64 250.4 306 48.0
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 2.6e-63 246.5 316 47.2
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 4.5e-63 245.7 350 44.0
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 7.6e-63 245.0 310 48.1
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 1.0e-62 244.6 309 49.8
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 2.9e-62 243.0 314 44.3
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.9e-62 243.0 314 44.3
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 6.5e-62 241.9 308 48.4
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 8.4e-62 241.5 310 44.8
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.4e-61 240.7 312 49.4
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 1.9e-61 240.4 306 46.7
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.9e-61 240.4 314 43.6
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 7.1e-61 238.4 305 48.5
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.6e-60 237.3 310 45.2
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.1e-60 236.9 339 44.8
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 6.1e-60 235.3 309 44.7
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.8e-59 233.8 376 42.0
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.8e-59 233.8 316 45.6
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 1.8e-59 233.8 314 45.5
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.3e-59 233.4 331 45.0
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 3.0e-59 233.0 327 45.9
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.3e-58 229.6 305 46.2
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.3e-58 229.6 312 45.5
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 5.7e-58 228.8 309 45.3
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 9.7e-58 228.0 311 44.1
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.3e-57 227.6 319 42.6
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.3e-57 227.6 311 44.4
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 4.1e-56 222.6 309 45.0
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-55 221.1 311 43.1
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.5e-55 220.7 313 43.8
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.0e-55 220.3 309 42.4
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 4.5e-55 219.2 332 42.2
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.7e-55 218.4 314 41.1
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.0e-54 218.0 283 45.6
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 5.0e-54 215.7 311 43.7
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 6.5e-54 215.3 312 43.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 8.5e-54 214.9 343 41.1
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 1.1e-53 214.5 306 44.1
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.4e-53 214.2 308 43.2
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.5e-53 213.4 311 42.4
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 9.4e-53 211.5 310 43.2
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.2e-52 211.1 315 43.5
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.6e-52 210.7 307 44.3
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 7.9e-52 208.4 302 44.4
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 7.9e-52 208.4 302 44.4
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 7.9e-52 208.4 310 42.6
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.0e-51 208.0 293 43.3
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.8e-51 207.2 307 42.0
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 3.9e-51 206.1 339 41.6
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 5.1e-51 205.7 315 42.2
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 8.8e-51 204.9 302 42.4
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-50 204.5 303 42.9
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 5.7e-50 202.2 325 41.5
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 7.4e-50 201.8 305 41.6
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-48 198.0 225 51.1
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.4e-48 196.8 289 44.3
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.2e-47 194.5 309 41.4
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 1.5e-47 194.1 301 40.5
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 3.4e-47 193.0 325 39.4
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 4.5e-47 192.6 341 39.9
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.9e-47 192.2 296 41.9
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.7e-46 190.7 313 39.3
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 8.5e-46 188.3 322 38.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 8.5e-46 188.3 314 39.5
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.1e-45 188.0 368 37.2
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.4e-45 187.6 305 41.0
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.4e-45 184.9 219 50.2
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.8e-43 180.6 310 40.0
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 7.4e-42 175.3 311 39.9
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.7e-41 174.1 222 48.6
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.8e-40 170.6 405 34.1
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.2e-39 167.9 313 39.3
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.1e-37 161.4 328 36.9
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 2.7e-36 156.8 305 35.1
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 4.7e-36 156.0 229 40.2
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.6e-31 141.0 228 40.8
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.5e-31 139.8 230 42.2
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.8e-30 136.3 319 34.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 6.1e-28 129.0 245 36.3
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 4.4e-26 122.9 299 29.8
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 2.8e-25 120.2 234 38.5
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 2.4e-24 117.1 264 29.5
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.4e-24 117.1 104 51.9
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.4e-24 117.1 339 29.2
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.4e-24 117.1 215 38.6
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 7.7e-23 112.1 222 36.9
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 6.5e-22 109.0 212 37.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 5.5e-21 105.9 101 51.5
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 4.7e-20 102.8 244 32.8
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.0e-20 102.1 202 37.1
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.8e-19 100.9 69 73.9
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.0e-19 99.8 55 85.5
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.5e-18 97.8 103 48.5
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 2.0e-18 97.4 128 45.3
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 4.4e-18 96.3 119 47.9
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.3e-14 84.0 183 39.3
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.9e-14 83.6 342 24.9
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 3.8e-14 83.2 315 27.6
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 1.1e-13 81.6 315 26.0
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.5e-13 81.3 106 40.6
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 8.0e-12 75.5 101 38.6
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 5.2e-11 72.8 49 65.3
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 4.1e-08 63.2 117 35.0
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 4.1e-08 63.2 69 53.6
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 2.0e-07 60.8 66 47.0
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 2.0e-07 60.8 75 41.3
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 2.9e-06 57.0 81 38.3
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 2.9e-06 57.0 92 38.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.9e-06 57.0 95 32.6


User provided reference genes

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