Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 1.8e-44 182.2 89 100.0
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 1.7e-31 139.0 89 76.4
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 8.5e-31 136.7 89 76.4
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.7e-29 131.7 89 76.4
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 4.4e-27 124.4 78 75.6
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 3.7e-26 121.3 89 69.7
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 8.3e-26 120.2 78 69.2
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.4e-25 119.4 87 66.7
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.8e-25 119.0 71 76.1
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 2.4e-25 118.6 72 76.4
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 3.1e-25 118.2 80 68.8
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 5.3e-25 117.5 80 66.2
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 5.3e-25 117.5 77 68.8
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 7.0e-25 117.1 71 76.1
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 9.1e-25 116.7 72 75.0
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.6e-24 115.9 77 72.7
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 2.0e-24 115.5 73 74.0
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 4.5e-24 114.4 77 72.7
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 2.9e-23 111.7 77 66.2
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 2.9e-23 111.7 71 74.6
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 6.5e-23 110.5 71 73.2
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 1.1e-22 109.8 86 64.0
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 1.9e-22 109.0 71 70.4
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 2.5e-22 108.6 73 68.5
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 2.5e-22 108.6 73 74.0
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 3.2e-22 108.2 67 74.6
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 4.2e-22 107.8 72 69.4
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 5.5e-22 107.5 73 69.9
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 7.2e-22 107.1 72 66.7
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 9.4e-22 106.7 73 69.9
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 9.4e-22 106.7 72 66.7
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 1.2e-21 106.3 72 68.1
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 2.7e-21 105.1 73 71.2
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 3.6e-21 104.8 72 65.3
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 3.6e-21 104.8 72 65.3
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 3.6e-21 104.8 71 64.8
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 4.7e-21 104.4 73 67.1
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 4.7e-21 104.4 72 65.3
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 6.1e-21 104.0 72 65.3
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 1.0e-20 103.2 72 68.1
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 1.0e-20 103.2 73 65.8
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 2.3e-20 102.1 81 59.3
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 2.3e-20 102.1 71 66.2
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 2.3e-20 102.1 71 66.2
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 4.0e-20 101.3 77 59.7
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 5.2e-20 100.9 71 70.4
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 6.8e-20 100.5 70 65.7
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 8.8e-20 100.1 71 64.8
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 1.2e-19 99.8 72 63.9
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.2e-19 99.8 70 64.3
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 2.6e-19 98.6 72 63.9
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 4.4e-19 97.8 71 69.0
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 5.7e-19 97.4 84 60.7
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 5.7e-19 97.4 69 69.6
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 9.8e-19 96.7 73 63.0
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 9.8e-19 96.7 73 63.0
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 1.3e-18 96.3 80 63.8
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.3e-18 96.3 89 57.3
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 1.3e-18 96.3 85 55.3
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 2.2e-18 95.5 71 57.7
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 6.3e-18 94.0 80 61.2
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 8.3e-18 93.6 74 59.5
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 1.8e-17 92.4 80 61.2
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 2.4e-17 92.0 80 60.0
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 2.4e-17 92.0 80 63.8
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 3.1e-17 91.7 80 60.0
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 5.4e-17 90.9 80 60.0
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 5.4e-17 90.9 80 60.0
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 5.4e-17 90.9 75 60.0
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 1.2e-16 89.7 83 57.8
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 7.7e-16 87.0 53 75.5
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 7.7e-16 87.0 53 75.5
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 1.0e-15 86.7 71 56.3
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 2.9e-15 85.1 66 59.1
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 3.8e-15 84.7 62 61.3
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 1.9e-14 82.4 71 56.3
Gohir.D07G127200 Gossypium hirsutum HOM05D007721 ORTHO05D009811 7.2e-14 80.5 61 67.2
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 9.5e-14 80.1 85 55.3
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 1.8e-12 75.9 69 53.6
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 9.2e-09 63.5 52 61.5
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 8.6e-07 57.0 47 55.3
arahy.Tifrunner.gnm1.ann1.K7RUU1 Arachis hypogaea HOM05D007721 ORTHO05D009811 3.3e-06 55.1 29 75.9
SHI29807 Sapria himalayana HOM05D012376 ORTHO05D000014 5.6e-06 54.3 37 62.2
Medtr3g018660 Medicago truncatula HOM05D007721 ORTHO05D009811 7.3e-06 53.9 27 88.9


User provided reference genes

Program Settings