Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.7e-270 934.9 524 100.0
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.5e-255 885.9 502 99.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 2.3e-224 782.3 528 84.7
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 7.1e-210 734.2 540 75.7
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.6e-161 573.5 536 65.9
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.6e-161 573.5 516 64.5
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 4.4e-159 565.5 536 66.0
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.1e-153 546.6 522 61.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.7e-153 546.2 583 58.0
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 3.1e-149 532.7 522 62.3
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 1.7e-147 526.9 522 59.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 8.6e-147 524.6 522 58.8
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 1.5e-143 513.8 517 63.1
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 3.7e-142 509.2 519 59.0
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 9.2e-141 504.6 517 58.2
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 2.3e-139 500.0 362 78.7
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.8e-137 493.0 513 57.9
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 6.8e-136 488.4 524 54.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 8.9e-136 488.0 528 56.2
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.5e-135 487.3 530 57.0
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 8.3e-134 481.5 513 59.6
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.8e-133 480.3 517 55.5
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.9e-132 475.3 514 55.8
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.3e-130 468.4 514 59.1
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.8e-128 463.8 521 55.5
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 4.0e-128 462.6 512 55.5
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 9.8e-127 458.0 519 53.8
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.3e-126 454.9 523 54.9
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.1e-125 454.5 517 54.9
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.2e-124 451.1 509 55.6
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 6.0e-124 448.7 511 55.4
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 6.6e-123 445.3 526 53.6
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.5e-122 444.1 554 51.1
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 5.2e-120 435.6 526 55.1
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 2.9e-118 429.9 493 52.7
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.9e-118 429.1 545 51.2
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 5.4e-117 425.6 525 52.4
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 5.6e-114 415.6 513 50.5
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 3.1e-112 409.8 508 50.2
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.5e-111 407.5 518 50.2
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.3e-110 404.4 512 52.3
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 7.1e-109 398.7 405 58.8
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.0e-108 395.6 484 53.5
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.9e-106 390.6 513 48.3
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 7.3e-106 388.7 505 49.5
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 1.6e-105 387.5 477 53.7
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 3.6e-105 386.3 514 51.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 2.2e-102 377.1 528 50.8
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 8.4e-102 375.2 461 51.6
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 8.4e-102 375.2 461 51.6
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 5.4e-101 372.5 540 49.3
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 9.3e-101 371.7 472 52.1
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.5e-100 369.8 397 56.9
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.6e-97 360.9 512 49.8
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 6.2e-97 359.0 516 47.9
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 6.9e-96 355.5 522 45.2
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 7.6e-95 352.1 510 47.5
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.2e-94 350.5 509 49.3
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.2e-94 350.5 505 46.5
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 5.4e-93 345.9 417 53.5
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.7e-92 343.6 437 51.5
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 6.7e-91 339.0 528 46.4
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 4.8e-89 332.8 576 43.9
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 6.2e-89 332.4 571 43.8
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.1e-88 331.6 531 45.8
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.4e-88 331.3 519 44.5
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 3.1e-88 330.1 459 47.3
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.4e-85 321.2 498 47.4
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.4e-85 320.5 486 45.3
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 5.5e-85 319.3 523 44.7
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 9.3e-85 318.5 522 46.7
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.7e-84 317.0 529 45.7
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 6.0e-84 315.8 529 43.1
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.3e-83 313.9 597 42.9
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.9e-83 313.2 309 62.5
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 5.1e-83 312.8 492 47.0
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 2.8e-81 307.0 530 45.3
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.6e-79 300.4 582 44.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 7.6e-79 298.9 509 43.0
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.3e-78 298.1 496 46.0
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.4e-77 294.7 515 45.2
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 4.2e-77 293.1 376 50.0
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 7.1e-77 292.4 581 39.8
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.2e-76 291.6 539 41.0
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 2.7e-76 290.4 378 49.2
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 6.0e-76 289.3 520 45.6
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.8e-75 287.7 541 42.0
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 2.5e-74 283.9 430 46.7
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 8.2e-73 278.9 431 47.8
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 8.2e-73 278.9 497 41.0
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 8.2e-73 278.9 507 42.4
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.1e-72 278.5 514 42.0
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 7.6e-71 272.3 521 40.9
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.0e-70 271.9 567 39.7
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 3.8e-70 270.0 516 43.2
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 5.0e-70 269.6 517 40.0
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.1e-69 268.5 512 44.7
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.5e-69 267.3 498 42.6
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.1e-68 262.7 301 60.5
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 5.7e-66 256.1 506 39.9
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.1e-64 251.9 567 37.7
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.8e-64 251.1 522 38.7
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 9.1e-64 248.8 605 38.7
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.7e-62 244.6 522 41.0
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.7e-62 244.6 507 42.0
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.5e-61 240.7 189 71.4
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 3.7e-57 226.9 503 41.0
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.8e-57 226.5 582 38.7
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 6.3e-57 226.1 523 35.4
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 3.1e-56 223.8 502 38.2
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 4.5e-55 219.9 506 37.9
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 6.5e-54 216.1 501 37.7
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.4e-53 214.9 502 37.6
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 2.5e-53 214.2 505 39.8
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 5.5e-53 213.0 556 33.6
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.6e-52 211.5 503 40.0
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.6e-52 211.5 538 35.3
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 2.1e-52 211.1 506 39.9
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 2.6e-50 204.1 489 39.5
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 4.8e-49 199.9 489 39.1
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 6.3e-49 199.5 505 38.8
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 7.0e-48 196.1 344 43.9
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 7.0e-48 196.1 501 34.1
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 5.9e-47 193.0 451 35.9
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.4e-43 181.8 298 45.3
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.5e-42 178.3 434 38.9
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 3.3e-42 177.2 566 34.5
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 2.1e-36 157.9 557 31.8
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.8e-33 146.7 157 54.1
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 4.8e-33 146.7 304 42.1
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.9e-30 137.5 277 40.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.2e-29 133.7 257 36.6
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.2e-29 133.7 127 54.3
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 7.5e-26 122.9 403 29.5
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 2.2e-25 121.3 114 56.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 2.1e-20 104.8 229 36.2
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 5.2e-19 100.1 173 36.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.3e-17 95.5 231 37.2
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 1.9e-13 81.6 95 45.3
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 8.0e-12 76.3 350 28.3
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.0e-10 71.6 82 50.0
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 2.2e-09 68.2 187 35.8


User provided reference genes

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