Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 3.0e-258 894.8 504 100.0
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 4.8e-256 887.5 502 99.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 4.0e-210 734.9 506 83.8
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 7.3e-196 687.6 518 74.7
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.4e-153 545.8 512 65.6
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.3e-152 543.9 501 63.9
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 9.4e-151 537.7 512 65.8
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.7e-150 536.2 509 61.9
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 9.1e-146 521.2 509 63.1
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 1.7e-144 516.9 513 59.1
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 8.5e-144 514.6 513 58.9
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.1e-143 514.2 560 57.1
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 1.2e-140 504.2 508 63.2
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 7.5e-140 501.5 509 58.9
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.3e-139 500.7 362 78.7
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.4e-138 496.5 506 59.3
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 8.0e-134 481.5 500 58.6
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.3e-133 479.9 507 58.6
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 4.0e-133 479.2 508 57.5
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 8.8e-133 478.0 506 55.7
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 2.8e-131 473.0 506 56.1
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 8.3e-131 471.5 504 59.7
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.0e-128 462.2 501 56.3
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.1e-126 456.8 501 59.9
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 5.2e-125 452.2 497 56.3
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 5.2e-125 452.2 504 56.5
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 5.7e-124 448.7 500 56.4
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.7e-123 447.2 504 54.6
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 6.3e-123 445.3 503 55.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.0e-122 441.8 508 55.5
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.6e-121 440.7 502 55.6
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.9e-120 436.4 515 54.0
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 3.3e-119 433.0 511 56.0
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.8e-118 429.9 539 51.6
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 4.9e-115 419.1 481 52.6
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.0e-114 415.2 530 51.7
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 1.3e-112 411.0 510 52.9
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.4e-109 401.0 502 50.4
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.3e-109 400.2 500 50.6
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 4.0e-109 399.4 500 50.2
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 2.0e-108 397.1 500 53.0
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.8e-108 395.6 484 53.5
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 4.1e-106 389.4 519 50.9
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.4e-106 389.0 390 59.7
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 7.0e-106 388.7 506 48.6
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 1.6e-105 387.5 501 49.7
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 5.2e-101 372.5 449 55.7
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 5.2e-101 372.5 513 51.3
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 8.9e-101 371.7 472 52.1
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.4e-100 369.8 397 56.9
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 3.7e-99 366.3 511 50.7
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.4e-98 364.4 449 51.7
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.4e-98 364.4 449 51.7
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.5e-95 354.4 504 48.4
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 3.3e-95 353.2 510 47.5
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 9.5e-95 351.7 509 49.3
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 9.5e-95 351.7 497 50.3
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.1e-93 346.7 498 46.2
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.6e-92 343.6 437 51.5
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.9e-91 340.1 528 46.4
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 4.1e-90 336.3 402 54.2
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 7.8e-89 332.0 485 47.2
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.3e-88 331.3 527 45.9
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 3.0e-88 330.1 459 47.3
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.6e-88 328.9 515 44.7
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.1e-87 328.2 559 44.0
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.1e-87 328.2 564 44.1
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 8.1e-86 322.0 498 47.4
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.4e-85 320.5 486 45.3
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.2e-84 318.2 529 45.7
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 5.8e-84 315.8 529 43.1
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.3e-83 314.7 509 47.7
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 2.9e-83 313.5 509 45.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.8e-83 313.2 309 62.5
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.9e-83 312.8 492 47.0
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 7.1e-82 308.9 572 43.9
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 5.1e-80 302.8 519 45.9
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 4.3e-79 299.7 509 43.0
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.3e-78 298.1 496 46.0
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 4.0e-77 293.1 376 50.0
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 6.9e-77 292.4 506 46.0
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 2.6e-76 290.4 378 49.2
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 3.4e-76 290.0 520 45.6
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 9.9e-76 288.5 541 42.0
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.3e-75 288.1 557 45.1
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 4.9e-75 286.2 560 40.4
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 6.4e-75 285.8 522 41.4
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 9.3e-74 282.0 426 46.9
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.6e-73 279.6 507 42.4
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.8e-72 277.7 489 41.5
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 3.0e-72 276.9 427 48.0
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 5.1e-72 276.2 510 42.2
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.6e-70 271.2 564 39.7
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 6.2e-70 269.2 512 44.7
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 8.1e-70 268.9 509 43.4
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.4e-69 267.3 516 40.9
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 7.6e-68 262.3 504 40.3
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.4e-66 258.1 479 42.8
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.4e-66 257.3 506 39.9
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 3.5e-65 253.4 564 37.9
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.4e-61 240.7 189 71.4
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.1e-61 240.4 510 41.8
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 3.1e-61 240.4 596 38.6
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 3.1e-61 240.4 496 39.1
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 4.0e-61 240.0 494 42.7
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.3e-59 235.0 277 59.6
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.7e-57 227.3 503 41.0
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 7.9e-57 225.7 520 35.4
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.8e-56 224.6 502 38.2
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 8.7e-56 222.2 568 39.1
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 3.7e-54 216.9 501 37.7
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 8.2e-54 215.7 502 37.6
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.8e-53 214.5 500 40.0
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 3.1e-53 213.8 493 38.3
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.2e-52 211.8 503 40.0
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 2.9e-51 207.2 537 33.9
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.9e-51 207.2 515 36.3
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 3.8e-51 206.8 493 40.6
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.4e-48 198.4 476 39.9
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 6.7e-48 196.1 344 43.9
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 6.7e-48 196.1 455 35.8
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 6.7e-48 196.1 501 34.1
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 8.8e-48 195.7 476 39.7
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.1e-47 195.3 492 39.4
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.3e-43 181.8 298 45.3
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.4e-42 178.3 434 38.9
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.4e-42 178.3 566 34.5
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.2e-36 158.7 557 31.8
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.7e-33 146.7 157 54.1
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.1e-31 142.1 292 42.5
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.8e-30 137.5 277 40.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.1e-29 133.7 257 36.6
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.1e-29 133.7 127 54.3
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 3.2e-26 124.0 403 29.5
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 2.1e-25 121.3 114 56.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.2e-20 105.5 229 36.2
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.9e-19 100.9 173 36.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.1e-17 94.7 226 37.6
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.5e-12 77.4 350 28.3
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.9e-10 71.6 82 50.0
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 1.9e-10 71.6 80 47.5
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 1.2e-09 68.9 187 35.8


User provided reference genes

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