Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.0e-42 175.6 108 100.0
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 3.1e-27 125.2 108 63.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 9.1e-27 123.6 108 77.8
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 9.1e-27 123.6 108 65.7
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.0e-26 122.5 109 63.3
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.0e-26 122.5 109 63.3
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 3.7e-20 101.7 107 53.3
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 4.5e-18 94.7 108 57.4
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.0e-17 93.6 108 64.8
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.8e-17 91.7 108 50.0
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.8e-17 91.7 108 53.7
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.4e-16 89.7 111 65.8
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.4e-16 89.7 111 65.8
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.4e-16 89.7 111 64.0
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.9e-16 89.4 109 53.2
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.9e-16 89.4 110 51.8
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.9e-16 89.4 111 53.2
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.5e-16 89.0 114 51.8
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.2e-15 86.7 113 47.8
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.2e-15 86.7 106 51.9
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.6e-15 86.3 108 48.1
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.1e-15 85.9 111 51.4
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 64.8
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 2.7e-15 85.5 107 49.5
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 2.7e-15 85.5 109 47.7
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.7e-15 85.5 111 64.0
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.7e-15 85.5 111 51.4
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.7e-15 85.5 111 64.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 2.7e-15 85.5 111 49.5
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 3.6e-15 85.1 114 64.9
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 6.1e-15 84.3 111 50.5
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.0e-15 84.0 114 51.8
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.0e-14 83.6 112 48.2
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.0e-14 83.6 110 50.9
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.4e-14 83.2 114 47.4
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 2.3e-14 82.4 107 49.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 2.3e-14 82.4 114 49.1
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.9e-14 81.6 111 48.6
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 6.7e-14 80.9 109 49.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 41.7
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.1e-13 80.1 106 55.7
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.0e-13 79.3 110 49.1
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.0e-13 79.3 110 49.1
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 2.6e-13 79.0 110 48.2
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.6e-13 79.0 112 50.9
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 2.6e-13 79.0 110 50.0
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 5.7e-13 77.8 122 44.3
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 5.7e-13 77.8 108 47.2
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.7e-13 77.8 116 59.5
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.7e-13 77.8 116 59.5
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 5.7e-13 77.8 111 57.7
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 9.7e-13 77.0 111 48.6
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 9.7e-13 77.0 110 43.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.3e-12 76.6 110 47.3
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.8e-12 75.5 109 47.7
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.8e-12 75.5 108 55.6
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 4.8e-12 74.7 107 41.1
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 4.8e-12 74.7 111 48.6
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 4.8e-12 74.7 109 45.0
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 6.3e-12 74.3 110 45.5
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 108 42.6
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 98 43.9
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 61.7
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.8e-11 72.8 117 41.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.4e-11 72.4 108 40.7
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.4e-11 72.4 105 40.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 2.4e-11 72.4 110 42.7
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.1e-11 71.6 115 54.8
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 4.1e-11 71.6 108 41.7
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.1e-11 71.6 109 42.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 4.1e-11 71.6 116 47.4
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.1e-11 71.6 118 42.4
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.3e-11 71.2 108 40.7
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 7.0e-11 70.9 108 45.4
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 7.0e-11 70.9 108 44.4
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 9.1e-11 70.5 112 43.8
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.2e-10 70.1 41 82.9
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.6e-10 69.7 112 42.9
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.6e-10 69.7 112 42.9
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.6e-10 69.7 112 42.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.6e-10 69.7 106 42.5
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.0e-10 69.3 110 54.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 3.5e-10 68.6 109 42.2
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 3.5e-10 68.6 118 44.9
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 3.5e-10 68.6 110 42.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 3.5e-10 68.6 107 44.9
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.5e-10 68.2 106 42.5
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.5e-10 68.2 106 42.5
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.5e-10 68.2 106 42.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 4.5e-10 68.2 113 49.6
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 4.5e-10 68.2 110 42.7
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 5.9e-10 67.8 106 42.5
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.7e-10 67.4 108 41.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 7.7e-10 67.4 107 43.9
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.0e-09 67.0 110 54.5
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.7e-09 66.2 111 42.3
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 2.2e-09 65.9 113 47.8
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-09 65.5 106 40.6
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-09 65.5 111 53.2
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.9e-09 65.5 110 43.6
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.9e-09 65.5 109 44.0
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.9e-09 65.5 110 45.5
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.9e-09 65.5 107 40.2
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.8e-09 65.1 106 41.5
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 3.8e-09 65.1 113 38.9
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 3.8e-09 65.1 110 43.6
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 5.0e-09 64.7 108 40.7
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 5.0e-09 64.7 110 43.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 6.5e-09 64.3 108 40.7
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 6.5e-09 64.3 109 55.0
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 8.5e-09 63.9 108 45.4
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 8.5e-09 63.9 108 45.4
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 8.5e-09 63.9 78 47.4
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.5e-09 63.9 108 38.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 107 40.2
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.1e-08 63.5 106 39.6
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-08 63.5 108 53.7
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.1e-08 63.5 108 38.9
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.9e-08 62.8 115 40.0
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 1.9e-08 62.8 111 41.4
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.9e-08 62.8 108 50.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 2.5e-08 62.4 113 36.3
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 3.2e-08 62.0 117 40.2
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 3.2e-08 62.0 117 41.0
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 5.5e-08 61.2 41 70.7
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 5.5e-08 61.2 106 39.6
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.5e-08 61.2 108 38.9
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.5e-08 61.2 108 38.9
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 5.5e-08 61.2 112 43.8
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 5.5e-08 61.2 105 40.0
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 7.2e-08 60.8 108 35.2
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.2e-07 60.1 113 44.2
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.6e-07 59.7 113 43.4
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.6e-07 59.7 110 39.1
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.7e-07 58.9 104 40.4
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.7e-07 58.9 86 43.0
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.6e-07 58.5 109 39.4
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 3.6e-07 58.5 97 45.4
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 3.6e-07 58.5 94 46.8
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 4.7e-07 58.2 39 69.2
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 4.7e-07 58.2 41 70.7
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 6.1e-07 57.8 38 63.2
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 6.1e-07 57.8 108 39.8
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.1e-07 57.8 108 51.9
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.3e-06 55.8 37 70.3
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.0e-06 55.1 38 65.8
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 4.0e-06 55.1 117 36.8
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 6.7e-06 54.3 112 52.7
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 6.7e-06 54.3 28 85.7
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 8.8e-06 53.9 108 50.0


User provided reference genes

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