Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 3.8e-128 461.5 226 100.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.4e-114 415.6 226 90.7
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.8e-110 402.1 229 88.2
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.3e-107 390.6 228 84.2
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.4e-106 389.8 228 84.6
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.4e-106 389.8 228 84.6
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.2e-105 386.7 229 84.3
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.6e-105 386.3 226 81.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 3.5e-105 385.2 226 80.5
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-103 380.2 226 81.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 9.5e-103 377.1 225 79.1
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.6e-102 376.3 226 81.0
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 6.8e-101 370.9 226 78.3
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.5e-100 369.8 227 80.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 2.0e-100 369.4 229 79.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.6e-100 369.0 226 78.3
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-99 366.7 226 78.8
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.7e-99 366.3 226 80.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.7e-99 365.2 226 76.5
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 5.4e-98 361.3 226 78.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.1e-97 359.4 226 75.7
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 4.6e-97 358.2 230 78.7
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.7e-96 356.3 226 75.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.5e-95 353.2 227 78.4
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-94 350.1 227 76.7
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.2e-94 350.1 227 77.1
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 6.2e-94 347.8 228 76.3
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.4e-93 346.7 227 74.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-93 346.7 227 74.4
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.8e-93 344.4 227 74.0
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.5e-92 343.2 227 74.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.6e-92 342.4 227 73.6
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.8e-92 341.3 227 73.6
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 9.9e-92 340.5 222 71.6
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.3e-91 340.1 229 71.2
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.9e-91 339.0 226 72.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 3.7e-91 338.6 229 72.1
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 6.4e-91 337.8 233 71.2
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 8.3e-91 337.4 229 70.7
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-89 333.6 227 75.8
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.6e-89 333.2 226 69.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.6e-89 331.6 227 75.3
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 4.6e-89 331.6 230 69.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.7e-88 329.7 226 73.9
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.9e-88 328.6 227 74.9
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.3e-87 325.5 227 69.6
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 4.3e-87 325.1 229 68.6
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 4.3e-87 325.1 227 69.6
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 5.6e-87 324.7 231 70.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.8e-86 322.4 227 70.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.1e-85 320.5 221 67.9
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.1e-85 320.5 230 68.7
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.1e-85 320.5 226 69.5
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.8e-85 319.7 232 68.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.5e-84 316.6 230 65.2
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 5.8e-84 314.7 219 66.2
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.9e-83 312.4 226 69.5
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.9e-83 312.4 236 67.4
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.4e-83 311.2 227 69.6
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.9e-82 309.7 226 67.7
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.4e-82 309.3 227 68.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 3.2e-82 308.9 227 67.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 4.2e-82 308.5 233 68.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 7.8e-81 304.3 226 66.4
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.0e-80 302.4 230 67.4
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.6e-78 296.6 229 65.5
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.1e-78 296.2 229 64.2
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.6e-78 295.4 230 65.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 6.2e-78 294.7 227 64.8
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 6.9e-77 291.2 230 68.3
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 6.9e-77 291.2 227 67.0
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 6.9e-77 291.2 228 66.2
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.2e-76 290.4 227 64.8
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.2e-76 290.4 226 63.7
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.6e-76 289.3 218 66.5
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.6e-76 289.3 226 64.6
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.4e-76 288.9 218 66.5
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.4e-76 288.9 168 80.4
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.8e-76 288.1 218 66.1
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.7e-75 286.6 226 61.9
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.9e-75 285.8 243 60.5
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 4.9e-75 285.0 228 64.5
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 6.4e-75 284.6 226 62.4
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.4e-74 282.7 223 62.8
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 3.2e-74 282.3 226 62.4
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.2e-74 282.0 227 64.3
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.6e-73 280.0 221 63.3
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.6e-73 280.0 229 64.2
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.3e-72 276.2 189 73.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.1e-72 275.0 230 63.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 5.1e-72 275.0 227 62.1
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.6e-72 274.6 226 58.8
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-71 273.9 226 61.5
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-71 273.9 226 61.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.1e-71 273.9 226 61.5
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-71 273.5 227 62.1
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.5e-71 273.5 229 60.7
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.5e-71 272.7 226 58.4
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 7.3e-71 271.2 227 62.6
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 7.3e-71 271.2 227 62.6
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 9.6e-71 270.8 221 59.7
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.3e-70 270.4 221 59.7
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.3e-70 270.4 221 59.7
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 8.1e-70 267.7 224 60.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.4e-69 266.9 221 57.9
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.4e-69 266.2 229 57.2
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.4e-69 266.2 223 59.2
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 4.0e-69 265.4 227 61.2
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 9.0e-69 264.2 240 57.5
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-68 263.8 226 60.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.4e-68 262.3 218 63.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 5.8e-68 261.5 218 62.8
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 7.6e-68 261.2 227 60.8
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 7.6e-68 261.2 227 60.4
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.3e-67 260.4 222 59.5
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.7e-67 260.0 220 58.2
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.9e-67 259.2 258 56.6
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 8.4e-67 257.7 227 59.5
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 3.2e-66 255.8 226 59.7
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.2e-66 255.4 237 57.4
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.2e-65 253.8 221 57.0
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.6e-65 253.4 186 67.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-64 250.8 248 54.8
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.0e-64 250.8 237 56.1
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.3e-64 250.4 223 55.6
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.8e-64 250.0 204 61.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.8e-64 250.0 217 58.1
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.8e-64 250.0 226 59.7
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.3e-64 249.6 229 57.2
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.3e-64 249.6 152 77.0
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.3e-63 245.4 231 59.7
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.1e-61 240.7 228 54.8
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.1e-61 239.2 226 56.2
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.4e-60 235.7 219 53.9
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 7.6e-60 234.6 221 54.3
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 8.4e-59 231.1 215 53.0
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.4e-59 231.1 219 53.4
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-58 230.7 217 53.5
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.9e-58 229.9 219 53.0
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.9e-58 229.9 225 52.9
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.5e-58 229.6 230 56.5
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.5e-58 229.6 220 53.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 5.5e-58 228.4 145 71.7
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 8.7e-56 221.1 218 51.4
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 4.3e-55 218.8 189 57.7
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.8e-54 216.1 144 68.8
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 3.7e-54 215.7 217 52.5
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.4e-53 213.8 205 55.1
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-53 213.4 228 54.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.1e-53 212.2 207 54.6
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 6.9e-53 211.5 210 53.8
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.9e-51 206.1 137 68.6
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.4e-50 203.8 164 65.2
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.9e-50 203.4 229 48.0
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 5.5e-50 201.8 195 52.3
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 9.3e-50 201.1 198 53.5
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.1e-49 199.9 277 45.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.1e-49 199.9 228 52.6
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.6e-49 198.7 229 48.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 6.1e-49 198.4 138 64.5
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.8e-48 196.8 225 46.2
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.1e-48 195.3 221 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 6.3e-46 188.3 232 46.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.3e-46 188.3 226 46.9
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.4e-45 187.2 167 55.7
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.5e-44 183.7 123 70.7
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 5.0e-43 178.7 216 50.0
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 2.3e-40 169.9 230 47.0
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.3e-40 169.9 230 47.0
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.0e-40 169.5 227 45.8
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 5.1e-40 168.7 135 62.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.7e-38 163.7 195 46.2
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 5.9e-36 155.2 106 64.2
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.3e-35 154.1 82 84.1
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.7e-30 137.1 88 73.9
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.5e-26 124.0 117 59.0
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-22 110.5 63 77.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.9e-18 97.1 54 75.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.4e-16 90.9 52 76.9
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 3.0e-08 63.2 137 34.3


User provided reference genes

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