Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 0.0e+00 1275.4 668 100.0
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 0.0e+00 1124.4 668 87.9
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 0.0e+00 1109.4 668 88.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 0.0e+00 1106.3 668 87.9
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 0.0e+00 1096.3 653 88.1
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 0.0e+00 1095.5 668 87.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.2e-309 1065.1 668 85.2
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.8e-267 925.2 669 72.2
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 8.9e-266 920.2 668 71.7
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 2.5e-260 902.1 665 71.4
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 6.4e-256 887.5 687 70.3
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 8.4e-256 887.1 660 71.7
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.1e-255 886.7 705 67.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 9.2e-255 883.6 668 69.3
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.6e-254 882.9 655 71.1
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 3.5e-254 881.7 673 69.2
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.7e-253 879.4 651 72.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.9e-252 875.9 654 69.7
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.3e-252 874.8 665 69.6
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.4e-250 869.8 658 69.5
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.4e-250 869.8 695 67.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 5.2e-250 867.8 664 69.4
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 3.8e-248 861.7 664 68.8
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.2e-246 856.7 655 69.6
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 6.0e-246 854.4 655 69.2
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.5e-244 849.7 661 67.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.1e-242 843.6 655 66.3
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.4e-242 843.2 662 67.4
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.8e-242 842.8 655 66.1
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-242 842.4 655 68.7
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-241 839.0 642 69.5
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-238 829.3 661 66.3
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.1e-238 829.3 635 68.2
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 3.5e-238 828.6 670 66.1
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-237 826.6 661 66.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 2.3e-237 825.9 668 65.3
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.3e-236 821.6 658 66.9
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.1e-235 819.3 655 66.1
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.7e-235 818.5 651 67.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.7e-235 818.5 655 67.2
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 4.8e-235 818.1 655 65.0
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 6.2e-235 817.8 654 67.0
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 4.0e-234 815.1 663 65.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.5e-233 813.1 661 65.7
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.0e-233 812.8 655 66.4
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 4.5e-233 811.6 659 64.6
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 7.6e-233 810.8 669 64.0
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 9.9e-233 810.4 655 66.3
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.8e-232 808.5 662 63.9
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 5.5e-231 804.7 668 64.1
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 9.3e-231 803.9 664 62.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.5e-230 802.0 661 65.1
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 6.0e-230 801.2 661 64.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 2.3e-229 799.3 661 63.5
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 3.0e-229 798.9 661 63.7
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.9e-228 796.2 661 63.7
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.6e-227 793.1 668 62.7
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.1e-227 792.7 660 63.6
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.1e-227 792.7 661 64.3
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.7e-227 792.0 654 65.3
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 6.2e-227 791.2 663 63.0
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 6.2e-227 791.2 663 63.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.4e-226 790.0 672 62.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.1e-226 788.9 661 63.8
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.0e-226 788.5 661 63.4
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 5.3e-226 788.1 661 63.2
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.8e-225 784.6 665 62.0
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.0e-224 783.9 622 66.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.7e-224 783.1 659 63.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 2.2e-224 782.7 691 60.8
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.4e-223 780.0 664 62.5
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 7.1e-223 777.7 668 62.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 9.3e-223 777.3 668 62.6
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 2.1e-222 776.2 661 62.5
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 3.3e-220 768.8 649 62.7
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-219 766.5 653 64.8
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 2.8e-219 765.8 670 61.2
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 3.7e-219 765.4 651 62.4
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.3e-219 764.6 584 67.8
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.1e-218 762.3 676 62.0
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 4.1e-218 761.9 580 71.4
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 4.1e-218 761.9 668 61.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.5e-217 760.0 673 60.0
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 2.0e-217 759.6 654 61.0
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 5.9e-217 758.1 549 71.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.3e-216 756.9 656 61.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.9e-216 755.7 668 60.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 8.5e-216 754.2 658 59.7
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 9.4e-215 750.7 668 59.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.1e-214 749.6 710 57.9
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 3.9e-213 745.3 671 59.8
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.1e-213 745.0 648 60.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.9e-212 743.0 674 59.1
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 2.8e-203 712.6 635 64.1
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.5e-201 706.8 537 67.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.8e-197 693.3 668 57.3
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.3e-197 693.0 668 57.3
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 4.8e-195 685.3 657 56.6
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.4e-194 682.9 655 56.0
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.2e-184 649.8 574 61.3
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.3e-181 639.8 670 53.4
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 5.2e-181 638.6 532 62.6
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 5.7e-180 635.2 670 54.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 7.0e-178 628.2 538 61.3
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.0e-177 626.7 513 64.1
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.0e-176 624.4 553 60.9
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.0e-165 587.8 668 49.7
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 2.4e-162 576.6 662 49.2
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.3e-159 566.2 668 48.8
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 3.1e-157 559.7 663 47.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 3.3e-151 539.7 429 66.2
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.1e-149 534.6 399 68.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.7e-144 517.3 654 44.0
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.1e-138 498.0 676 44.1
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.5e-135 486.9 651 43.9
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 9.0e-133 478.4 662 44.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.0e-132 477.2 651 42.9
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 2.6e-132 476.9 402 65.4
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.3e-131 474.6 389 63.2
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 2.5e-127 460.3 656 40.1
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.2e-94 350.9 622 38.3
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.5e-90 337.4 245 70.2
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 6.3e-86 322.8 251 65.3
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 8.0e-81 305.8 430 44.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.5e-74 284.3 259 57.1
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 5.9e-68 263.1 195 72.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.7e-68 262.7 219 65.8
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 2.5e-66 257.7 622 33.0
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 9.4e-66 255.8 452 38.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 3.6e-65 253.8 382 42.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.3e-54 218.8 250 49.2
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 2.3e-51 208.0 306 45.1
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 4.0e-48 197.2 306 41.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 4.6e-44 183.7 176 53.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 6.0e-44 183.3 202 54.0
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.3e-42 177.2 258 41.5
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-40 172.6 133 65.4
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.8e-39 166.0 237 46.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 3.1e-32 144.4 108 66.7
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 7.6e-31 139.8 626 25.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 7.6e-31 139.8 98 68.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.1e-29 134.0 188 47.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.6e-25 122.1 96 64.6
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.1e-25 119.8 124 55.6
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.6e-23 113.2 134 50.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-22 111.7 132 48.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.4e-22 110.2 132 50.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.6e-20 105.5 141 46.8
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.7e-19 102.1 78 66.7
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-18 99.0 78 64.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.6e-18 97.1 86 62.8
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.1e-17 95.1 76 71.1
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.2e-17 93.6 66 72.7
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 6.9e-16 90.1 71 60.6
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 9.3e-13 79.7 70 55.7
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-11 75.9 70 51.4
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 8.7e-11 73.2 69 60.9
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.5e-10 71.6 82 51.2
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.4e-08 65.9 51 68.6
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 1.4e-08 65.9 103 43.7
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-08 65.1 50 62.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.2e-07 62.8 65 53.8
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.5e-07 62.4 54 50.0
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 2.6e-07 61.6 235 24.3
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 6.4e-06 57.0 48 58.3
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 6.4e-06 57.0 52 51.9


User provided reference genes

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