Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.0e-245 852.0 444 100.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.4e-182 643.3 446 78.0
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 2.3e-177 625.9 446 76.7
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 3.3e-176 622.1 443 76.7
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.5e-152 543.5 452 69.2
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 6.6e-148 528.1 452 68.4
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.8e-137 493.4 468 60.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.6e-130 469.2 458 60.0
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 3.6e-130 469.2 475 57.7
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.1e-129 467.6 447 59.7
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 3.1e-129 466.1 469 56.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 6.8e-129 464.9 445 60.4
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-128 462.6 444 60.8
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 8.3e-127 458.0 399 63.9
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 4.7e-122 442.2 445 58.0
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 8.1e-122 441.4 442 58.1
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 8.9e-121 438.0 446 57.0
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.6e-120 436.4 448 57.6
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.9e-118 430.3 451 57.2
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 2.4e-118 429.9 462 56.7
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.2e-117 427.6 416 59.9
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.7e-117 426.4 451 57.0
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.1e-115 421.0 496 53.2
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 4.7e-114 415.6 447 57.7
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 6.2e-114 415.2 454 55.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 3.8e-111 406.0 440 55.9
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 3.8e-111 406.0 403 59.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 4.9e-111 405.6 448 55.6
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.4e-110 404.1 450 54.2
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 4.2e-110 402.5 448 54.5
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.9e-108 396.0 453 53.6
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 6.6e-108 395.2 460 53.0
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 6.6e-108 395.2 447 52.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 2.5e-107 393.3 457 53.4
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.4e-105 387.5 453 53.6
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.4e-105 386.7 455 53.0
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 4.4e-104 382.5 450 54.2
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.9e-104 381.3 438 53.2
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.3e-103 380.9 456 54.6
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.7e-103 380.6 454 50.7
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.4e-102 377.5 450 51.8
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 2.4e-102 376.7 449 51.0
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.2e-102 376.3 492 50.2
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 7.1e-102 375.2 430 55.3
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.5e-101 372.9 443 51.5
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 7.8e-101 371.7 447 50.3
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 2.3e-100 370.2 439 50.6
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.9e-99 367.1 446 52.0
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.9e-99 367.1 316 64.6
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 4.3e-99 365.9 443 50.8
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 9.6e-99 364.8 407 53.8
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.1e-97 359.8 444 50.2
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.5e-96 357.5 467 49.9
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.6e-96 356.7 440 50.0
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.3e-95 354.4 507 47.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.2e-95 353.6 451 48.6
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 4.2e-94 349.4 479 47.4
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.1e-93 347.1 403 52.4
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 3.5e-93 346.3 471 49.3
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.0e-93 345.5 414 52.4
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 7.9e-93 345.1 456 47.1
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.3e-92 344.4 457 48.8
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.3e-92 343.6 487 46.6
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.0e-92 343.2 403 51.6
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 8.7e-92 341.7 458 47.4
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 5.6e-91 339.0 436 49.5
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 7.4e-91 338.6 450 47.1
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 7.4e-91 338.6 452 47.1
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 9.6e-91 338.2 397 49.1
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.4e-89 333.6 446 47.3
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.0e-89 332.8 429 50.8
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.2e-88 331.3 447 47.9
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 4.5e-88 329.3 449 47.2
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 3.8e-87 326.2 394 50.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.9e-86 323.9 455 46.2
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.9e-86 323.9 455 46.2
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.5e-86 323.6 456 47.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 4.2e-86 322.8 417 48.9
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 2.7e-85 320.1 431 45.9
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.0e-84 318.2 458 46.9
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 5.7e-83 312.4 447 46.3
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.3e-82 311.2 444 46.4
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.6e-82 310.8 453 45.0
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.3e-79 301.2 425 47.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 6.5e-79 298.9 449 45.9
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.4e-78 297.7 390 48.2
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 1.9e-78 297.4 452 43.6
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.9e-78 297.4 464 44.2
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.9e-78 297.4 465 44.1
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.5e-78 297.0 460 43.7
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.2e-77 294.7 457 43.3
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.1e-77 293.9 463 43.2
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.1e-77 293.9 356 51.4
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.5e-75 287.7 377 48.3
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 4.3e-75 286.2 442 44.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 4.1e-73 279.6 471 42.9
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 5.3e-73 279.3 394 47.0
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.2e-72 278.1 338 50.0
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.0e-72 277.3 465 43.7
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 5.5e-70 269.2 287 52.3
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.6e-69 267.7 469 41.8
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 5.1e-68 262.7 394 44.9
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 5.3e-65 252.7 221 63.8
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-63 248.1 303 53.5
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-63 248.1 288 53.1
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.2e-63 247.3 338 46.4
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 7.2e-62 242.3 249 58.2
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 9.4e-62 241.9 301 50.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.3e-60 237.3 370 42.7
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 5.1e-60 236.1 448 40.4
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 5.1e-60 236.1 448 40.4
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 6.7e-60 235.7 434 39.4
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 2.0e-59 234.2 449 40.1
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.6e-59 233.8 349 45.8
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.3e-58 231.5 425 39.3
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 8.2e-58 228.8 359 46.0
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 7.0e-57 225.7 191 64.9
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.7e-50 204.5 294 49.0
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.8e-50 203.8 375 41.1
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.0e-47 195.3 169 62.1
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 3.6e-45 186.8 316 41.1
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.0e-44 183.3 272 43.0
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.2e-42 177.6 217 53.5
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.3e-39 168.3 189 50.8
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 6.1e-37 159.5 464 31.7
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 6.8e-36 156.0 232 45.3
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.2e-35 155.2 156 55.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 5.7e-35 152.9 143 58.0
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.3e-28 131.0 159 55.3
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 6.8e-28 129.4 159 54.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.4e-27 126.7 236 38.1
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.7e-26 123.6 133 53.4
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.7e-18 98.2 79 68.4
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 5.2e-12 76.6 300 28.0
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 7.5e-11 72.8 128 35.2
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.1e-09 68.9 95 46.3
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.4e-09 67.8 51 64.7
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.1e-09 66.2 117 35.9
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.3e-07 62.0 124 33.1
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.1e-06 58.9 171 33.9


User provided reference genes

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