Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.4e-204 716.1 359 100.0
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.1e-180 636.7 359 86.4
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.1e-180 635.2 359 86.1
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 1.7e-178 629.4 359 85.5
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 4.8e-173 611.3 359 84.7
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 6.0e-160 567.8 356 78.1
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.3e-159 565.8 355 78.6
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 8.7e-159 563.9 358 76.8
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.5e-158 563.1 356 78.1
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.5e-158 563.1 360 77.2
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 2.5e-158 562.4 353 78.2
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 2.8e-157 558.9 360 76.7
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 6.2e-157 557.8 360 76.4
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.1e-156 557.0 355 76.9
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.8e-156 556.2 360 76.1
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.2e-155 553.5 356 76.7
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 3.4e-155 552.0 356 78.1
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 5.8e-155 551.2 359 77.7
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 3.8e-154 548.5 355 75.8
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 4.9e-154 548.1 359 73.5
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 4.9e-154 548.1 362 75.7
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 6.5e-154 547.7 360 75.8
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 9.3e-153 543.9 356 74.7
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.2e-152 543.5 357 74.8
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 6.7e-151 537.7 359 74.7
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.9e-150 536.2 361 73.1
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 5.7e-150 534.6 360 74.7
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.7e-150 534.6 363 74.7
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.6e-149 533.1 360 73.6
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 4.8e-149 531.6 361 73.4
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 8.2e-149 530.8 358 73.5
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.2e-147 526.9 360 73.9
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.2e-147 526.9 360 73.9
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.2e-147 526.9 358 73.7
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 2.0e-147 526.2 356 73.3
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 2.0e-147 526.2 360 74.7
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 2.0e-147 526.2 361 72.9
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 7.7e-147 524.2 356 73.3
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.3e-146 523.5 360 71.9
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 2.9e-146 522.3 360 74.4
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 2.9e-146 522.3 384 69.3
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 8.5e-146 520.8 358 72.1
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.4e-145 520.0 356 73.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 2.5e-145 519.2 356 73.3
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 3.2e-145 518.8 356 74.2
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 5.5e-145 518.1 359 72.7
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 5.5e-145 518.1 356 73.3
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 7.2e-145 517.7 356 72.5
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.2e-144 516.9 358 72.6
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.6e-144 516.5 361 72.6
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 1.6e-144 516.5 354 72.9
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 2.1e-144 516.2 357 72.0
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 2.1e-144 516.2 359 73.5
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 7.9e-144 514.2 358 72.3
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 7.9e-144 514.2 360 69.7
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.0e-143 513.8 358 72.1
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.4e-143 513.5 355 71.5
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.8e-143 513.1 356 73.9
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 2.3e-143 512.7 356 72.2
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.3e-143 512.7 360 69.4
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 3.0e-143 512.3 358 71.8
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 3.9e-143 511.9 359 73.8
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 5.1e-143 511.5 361 73.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 8.8e-143 510.8 356 73.9
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.2e-138 496.1 357 68.6
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.9e-137 493.0 360 67.5
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 1.9e-137 493.0 356 68.8
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 4.2e-137 491.9 317 75.7
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.5e-137 491.5 363 70.2
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 9.4e-137 490.7 358 68.7
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.1e-136 489.6 356 68.8
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.8e-135 486.5 356 68.3
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.8e-133 479.2 357 66.9
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.1e-132 475.7 356 65.2
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 3.1e-132 475.7 356 66.6
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 5.3e-132 474.9 356 69.7
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.5e-131 473.4 357 66.4
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 2.9e-130 469.2 384 62.8
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.9e-130 469.2 363 65.6
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.8e-127 459.9 360 64.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.2e-125 453.0 356 65.2
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 3.7e-125 452.2 374 63.9
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.1e-124 450.7 355 65.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.1e-124 450.7 474 53.4
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.8e-124 449.9 378 63.0
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 7.0e-124 448.0 354 63.8
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.5e-121 439.5 352 65.6
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 2.0e-118 429.9 355 61.1
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 2.6e-118 429.5 356 62.6
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 4.2e-105 385.6 356 59.0
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.5e-105 385.2 257 72.8
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 6.1e-104 381.7 252 72.6
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.8e-103 380.2 258 72.9
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.3e-101 374.0 350 52.6
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 3.1e-100 369.4 251 73.7
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.2e-93 346.7 374 48.1
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 6.0e-91 338.6 355 47.9
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.0e-90 337.8 358 48.9
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.9e-89 333.6 293 60.8
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.7e-88 328.9 342 49.4
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.3e-85 320.9 356 51.4
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.5e-83 312.8 362 46.4
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.2e-80 304.3 201 73.6
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.8e-80 303.1 352 45.5
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 3.7e-77 292.7 346 43.1
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 3.2e-76 289.7 201 72.1
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.8e-71 273.9 355 42.0
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 5.8e-70 268.9 359 41.8
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.5e-54 217.6 156 73.1
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 5.6e-49 199.1 147 68.7
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.9e-41 174.1 185 56.8
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 3.7e-40 169.9 223 46.6
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 3.5e-35 153.3 104 69.2
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 7.9e-35 152.1 409 29.6
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.6e-32 144.4 128 59.4
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 3.7e-32 143.3 363 29.5
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 9.0e-31 138.7 101 66.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 1.3e-29 134.8 153 52.3
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 5.5e-28 129.4 85 70.6
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 7.2e-28 129.0 94 68.1
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 4.3e-25 119.8 97 61.9
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 5.7e-25 119.4 91 65.9
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 4.8e-24 116.3 134 52.2
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.5e-21 105.9 88 63.6
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.9e-20 104.4 88 62.5
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.6e-19 101.3 137 46.0
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 2.3e-18 97.4 106 50.9
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 2.3e-18 97.4 106 50.9
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.1e-15 87.0 97 51.5
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 2.0e-14 84.3 51 76.5
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 6.7e-10 69.3 88 47.7


User provided reference genes

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