Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 3.6e-93 345.1 177 100.0
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.4e-81 305.8 171 91.2
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.2e-79 299.3 178 88.2
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 9.4e-78 293.9 169 90.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.3e-75 285.4 160 90.0
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 8.2e-74 280.8 177 79.7
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.2e-72 276.9 177 78.5
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 3.5e-72 275.4 176 82.4
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.2e-71 272.7 147 93.2
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 3.8e-71 271.9 178 77.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.0e-71 271.6 177 78.0
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 8.5e-71 270.8 177 78.5
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.9e-70 269.6 177 78.0
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 4.2e-70 268.5 175 78.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 5.5e-70 268.1 177 77.4
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 4.7e-69 265.0 176 77.3
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 4.7e-69 265.0 176 77.3
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 6.1e-69 264.6 177 74.0
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 6.1e-69 264.6 177 76.3
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 6.1e-69 264.6 177 76.3
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.0e-68 263.8 177 75.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.4e-68 263.5 188 73.4
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.8e-68 263.1 176 76.7
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 5.2e-68 261.5 183 74.9
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 6.8e-68 261.2 175 74.9
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 6.8e-68 261.2 168 81.5
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 8.8e-68 260.8 176 77.3
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.2e-67 260.4 177 75.7
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.2e-67 260.4 179 76.5
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.5e-67 260.0 177 72.9
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.0e-67 259.6 179 77.1
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.0e-67 259.6 147 84.4
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.4e-67 258.8 183 73.8
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.4e-67 258.8 176 75.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 5.7e-67 258.1 168 76.8
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 5.7e-67 258.1 185 71.4
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.7e-67 258.1 179 76.0
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 7.5e-67 257.7 182 75.8
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.5e-67 257.7 177 72.3
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 7.5e-67 257.7 176 75.0
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 9.8e-67 257.3 147 85.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.3e-66 256.9 180 72.8
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.3e-66 256.9 177 72.9
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.7e-66 256.5 179 75.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.7e-66 256.5 172 74.4
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.7e-66 256.5 145 86.2
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.8e-66 255.8 177 74.6
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.8e-66 255.8 147 83.0
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.8e-66 255.8 177 76.3
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 3.7e-66 255.4 187 71.1
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 4.8e-66 255.0 180 75.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 8.3e-66 254.2 181 73.5
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 1.1e-65 253.8 180 72.8
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.1e-65 253.8 178 72.5
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.8e-65 253.1 180 72.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.8e-65 253.1 181 72.9
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.8e-65 253.1 180 75.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.8e-65 253.1 147 82.3
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.8e-65 253.1 177 72.3
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.1e-65 252.3 176 73.9
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.4e-65 251.5 178 73.6
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 5.4e-65 251.5 147 85.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 7.0e-65 251.1 182 72.0
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 7.0e-65 251.1 172 72.7
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 7.0e-65 251.1 167 74.9
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 9.1e-65 250.8 180 71.7
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.2e-64 250.4 179 71.5
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 1.6e-64 250.0 177 71.8
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.0e-64 249.6 176 73.9
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 2.0e-64 249.6 147 82.3
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.7e-64 249.2 177 74.6
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 3.5e-64 248.8 149 81.2
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 3.5e-64 248.8 177 71.8
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 4.5e-64 248.4 177 71.2
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.0e-63 247.3 181 72.4
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-63 246.9 147 80.3
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.7e-63 246.5 150 82.0
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.3e-63 246.1 146 80.8
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.3e-63 246.1 177 72.3
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 2.9e-63 245.7 196 66.3
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 2.9e-63 245.7 146 82.2
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 5.0e-63 245.0 155 78.7
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 6.6e-63 244.6 148 81.1
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 8.6e-63 244.2 143 82.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-62 243.8 148 81.1
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.5e-62 243.4 160 76.9
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.9e-62 243.0 143 82.5
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.5e-62 242.7 186 69.4
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.3e-62 242.3 177 70.6
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 3.3e-62 242.3 147 80.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.2e-62 241.9 177 69.5
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 5.5e-62 241.5 147 81.6
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 7.2e-62 241.1 183 69.4
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 9.5e-62 240.7 223 58.7
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.2e-61 240.4 147 78.9
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.6e-61 238.8 147 78.9
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.7e-61 238.4 147 81.0
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 8.0e-61 237.7 147 76.9
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 8.0e-61 237.7 169 74.0
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 8.0e-61 237.7 169 74.0
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.4e-60 236.9 147 77.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 4.0e-60 235.3 189 66.1
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.0e-60 235.3 176 69.3
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.5e-59 233.4 177 68.4
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 2.0e-59 233.0 147 78.9
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 5.7e-59 231.5 147 79.6
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.9e-58 228.4 187 65.2
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.9e-58 228.4 181 67.4
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 3.1e-57 225.7 147 76.2
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.6e-56 223.4 177 63.8
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.7e-56 222.6 159 71.1
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.8e-56 221.1 187 63.1
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-55 220.3 162 72.2
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-55 220.3 162 72.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-55 220.3 162 72.2
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.3e-55 220.3 178 66.9
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 8.6e-55 217.6 180 62.8
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-54 217.2 162 71.0
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.9e-54 216.5 149 67.8
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 5.6e-54 214.9 177 65.5
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.1e-53 213.0 149 67.8
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.6e-53 212.2 177 64.4
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.8e-52 209.9 123 83.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-52 209.1 178 65.7
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-52 209.1 178 65.7
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.2e-51 207.2 143 72.0
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.2e-51 207.2 149 71.1
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 9.8e-51 204.1 149 65.1
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 6.4e-50 201.4 123 79.7
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 8.3e-50 201.1 160 62.5
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 8.3e-50 201.1 178 63.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.4e-49 199.5 169 63.9
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.4e-49 199.5 177 62.7
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 5.0e-47 191.8 146 69.2
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 6.6e-47 191.4 146 63.0
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 8.6e-47 191.0 143 69.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 1.9e-46 189.9 133 72.2
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.3e-46 189.1 129 73.6
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.3e-46 188.7 151 61.6
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 5.6e-46 188.3 148 68.2
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 5.2e-44 181.8 201 55.2
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 8.9e-44 181.0 106 84.9
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.0e-43 179.9 148 59.5
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 5.8e-43 178.3 177 55.4
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.2e-42 176.4 108 79.6
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.5e-38 163.7 108 75.0
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-38 163.7 139 61.2
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 3.1e-36 156.0 93 80.6
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 5.2e-36 155.2 121 68.6
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 3.4e-35 152.5 89 82.0
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 3.2e-33 146.0 82 85.4
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 7.8e-32 141.4 132 60.6
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.0e-27 126.7 164 48.8
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.4e-25 119.8 111 62.2
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.0e-23 114.4 96 56.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 5.6e-22 108.6 140 40.7
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 6.9e-20 101.7 75 72.0
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 4.2e-17 92.4 165 34.5
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.8e-12 77.0 77 54.5
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.8e-12 77.0 68 58.8
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 2.2e-10 70.1 188 28.7
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 8.4e-10 68.2 55 63.6
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 8.7e-07 58.2 33 75.8
COL.COLO4_35030 Corchorus olitorius HOM05D000001 ORTHO05D010435 2.5e-06 56.6 32 81.2
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 3.3e-06 56.2 39 82.1


User provided reference genes

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