Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.1e-142 508.4 259 100.0
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 5.2e-121 438.0 261 86.2
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.9e-110 402.9 247 84.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.4e-110 401.4 265 77.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.4e-104 381.7 248 79.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 9.9e-104 380.6 248 78.2
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.0e-93 344.7 215 83.3
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.6e-92 341.3 215 82.3
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.3e-91 339.0 215 82.3
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.8e-82 309.3 269 66.5
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.4e-81 307.0 253 68.4
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.4e-81 306.2 261 69.3
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 5.3e-81 305.1 246 70.3
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 6.9e-81 304.7 250 70.0
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.6e-80 302.8 259 68.7
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.2e-79 299.7 259 65.3
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 4.2e-78 295.4 251 67.7
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 7.1e-78 294.7 259 64.9
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.1e-77 293.1 213 77.5
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.5e-77 292.4 255 65.5
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 3.5e-77 292.4 247 67.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 7.9e-77 291.2 247 68.8
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.0e-76 290.8 259 67.6
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.1e-75 287.3 246 67.5
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.5e-75 287.0 257 64.2
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.9e-75 286.6 250 64.8
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 2.1e-74 283.1 255 64.3
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.1e-74 283.1 257 64.6
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 2.1e-74 283.1 251 64.5
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.1e-74 283.1 251 64.9
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.7e-74 282.3 256 62.9
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 4.8e-74 282.0 242 68.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 6.2e-74 281.6 255 63.1
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 8.1e-74 281.2 252 62.7
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.4e-73 280.4 259 62.2
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.4e-73 280.4 253 64.8
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.4e-73 280.4 254 63.4
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.4e-73 280.4 254 63.4
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.1e-73 279.3 251 65.7
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.1e-73 279.3 259 64.1
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.0e-73 278.9 254 62.6
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.3e-73 278.5 246 64.2
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.3e-73 278.5 246 64.2
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 9.0e-73 277.7 259 62.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 9.0e-73 277.7 259 62.5
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 9.0e-73 277.7 255 63.5
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.6e-72 276.2 257 62.3
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.6e-72 276.2 257 62.3
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 2.6e-72 276.2 250 66.0
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 3.4e-72 275.8 258 64.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 7.6e-72 274.6 257 61.5
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 9.9e-72 274.2 260 64.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 9.9e-72 274.2 257 63.4
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.3e-71 273.9 251 63.7
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.7e-71 273.5 234 65.8
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.7e-71 273.5 259 62.5
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 2.2e-71 273.1 251 64.5
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 3.8e-71 272.3 252 62.7
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 4.9e-71 271.9 248 65.3
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 8.4e-71 271.2 254 61.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.1e-70 270.8 250 62.4
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.2e-70 269.2 242 64.0
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 5.5e-70 268.5 259 62.2
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 7.1e-70 268.1 268 59.3
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 9.3e-70 267.7 249 63.5
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.2e-69 267.3 257 61.1
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.2e-69 267.3 248 64.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.6e-69 266.9 254 61.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.6e-69 266.9 248 62.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.7e-69 266.2 240 66.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 4.6e-69 265.4 246 62.2
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 5.1e-68 261.9 215 69.3
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 8.7e-68 261.2 208 70.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.9e-67 260.0 214 68.7
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 3.3e-67 259.2 253 58.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 4.3e-67 258.8 249 59.4
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 9.6e-67 257.7 211 67.3
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 9.6e-67 257.7 192 72.9
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.6e-66 256.9 250 60.0
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.6e-66 256.9 252 61.5
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.7e-66 255.8 259 59.5
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 8.2e-66 254.6 209 67.9
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 8.2e-66 254.6 261 60.9
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 1.1e-65 254.2 245 60.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.4e-65 253.1 245 60.8
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 4.0e-65 252.3 238 61.8
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 4.0e-65 252.3 205 69.8
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 5.3e-65 251.9 220 68.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 9.0e-65 251.1 205 69.3
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.0e-64 250.0 247 60.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.0e-64 250.0 256 59.8
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 4.5e-64 248.8 196 72.4
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.5e-64 248.8 272 57.0
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 7.6e-64 248.1 209 64.6
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.0e-63 247.7 259 60.2
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.9e-63 246.1 240 59.6
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 8.4e-63 244.6 249 57.0
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.2e-62 242.7 214 65.0
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.0e-60 237.7 240 59.2
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.3e-60 236.5 248 57.7
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.3e-60 236.5 240 61.7
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 9.7e-59 231.1 259 55.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 2.2e-58 229.9 250 56.8
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.8e-58 229.6 202 61.4
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.8e-58 228.8 202 60.9
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 4.8e-58 228.8 247 57.1
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.1e-57 225.7 241 54.8
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.2e-56 224.2 259 54.8
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.8e-55 219.2 226 56.6
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 3.8e-55 219.2 220 59.1
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 5.0e-55 218.8 255 54.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.5e-55 218.4 234 55.1
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 6.5e-55 218.4 256 51.6
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.1e-54 217.6 188 65.4
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.4e-54 217.2 221 57.5
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.4e-54 217.2 234 55.1
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.9e-54 216.9 220 58.2
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 9.4e-54 214.5 215 61.4
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.6e-53 213.8 246 55.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 6.1e-53 211.8 161 72.7
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.1e-52 208.8 259 52.1
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 3.3e-51 206.1 161 72.0
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 4.3e-51 205.7 235 56.6
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 5.7e-51 205.3 208 58.7
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.7e-51 205.3 161 70.8
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.7e-51 205.3 161 70.8
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 9.7e-51 204.5 266 50.0
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.2e-47 193.4 143 74.1
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.0e-47 192.2 205 58.5
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 9.4e-46 188.0 232 50.4
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.3e-44 183.3 175 62.3
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.3e-44 183.3 201 54.2
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 3.7e-42 176.0 207 55.1
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-40 171.0 126 74.6
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.0e-40 170.2 239 46.9
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.0e-39 167.9 169 55.6
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.3e-39 167.5 203 51.2
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.2e-39 166.8 222 45.0
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.6e-37 160.6 209 46.9
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.1e-37 160.2 205 48.3
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.7e-37 159.8 117 75.2
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 9.7e-35 151.4 234 42.3
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 5.3e-33 145.6 99 78.8
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.5e-32 142.5 197 43.7
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.9e-30 137.1 216 41.7
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.7e-29 133.3 184 46.7
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.8e-28 128.6 197 41.6
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.2e-26 123.6 89 74.2
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.1e-25 119.8 124 57.3
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 2.2e-23 113.6 137 53.3
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.5e-22 110.9 95 60.0
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.2e-14 82.0 93 46.2
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.8e-12 77.4 134 44.0
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.2e-12 75.9 151 41.7
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 2.6e-11 73.6 89 50.6
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 7.5e-11 72.0 89 48.3
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.7e-07 60.8 63 57.1
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 2.3e-07 60.5 160 30.0
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 6.6e-07 58.9 82 42.7
MCO11G868 Micromonas commoda HOM05D004453 ORTHO05D005375 3.3e-06 56.6 172 27.3


User provided reference genes

Program Settings