Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 3.3e-225 784.6 378 100.0
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 5.9e-190 667.5 390 84.1
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 2.9e-189 665.2 384 84.1
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 2.0e-177 625.9 378 78.8
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 2.0e-177 625.9 378 79.1
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 4.4e-177 624.8 378 78.8
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 7.0e-175 617.5 399 76.2
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 1.7e-173 612.8 354 84.2
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 3.8e-173 611.7 354 82.8
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 6.5e-173 610.9 402 75.1
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 8.5e-173 610.5 401 75.6
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 1.1e-172 610.1 351 83.8
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 5.5e-172 607.8 356 82.0
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 9.4e-172 607.1 352 81.5
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.2e-171 606.7 356 82.6
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 3.6e-171 605.1 402 73.6
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.0e-170 603.6 353 81.6
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 1.8e-170 602.8 351 82.1
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 2.6e-169 599.0 396 74.0
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 2.6e-169 599.0 357 81.5
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 2.6e-169 599.0 356 80.6
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 4.4e-169 598.2 403 73.2
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 9.8e-169 597.0 371 77.6
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 1.7e-168 596.3 354 81.4
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 2.2e-168 595.9 353 81.0
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 2.2e-168 595.9 361 79.2
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 2.8e-168 595.5 354 79.4
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 4.9e-168 594.7 357 79.0
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 6.3e-168 594.3 358 80.2
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.4e-167 593.2 338 83.4
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 1.8e-167 592.8 357 78.4
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.8e-167 592.8 358 79.9
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 2.4e-167 592.4 378 76.2
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 4.1e-167 591.7 385 74.3
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 4.1e-167 591.7 351 80.3
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 5.4e-167 591.3 351 80.3
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 5.4e-167 591.3 356 78.7
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 7.0e-167 590.9 349 81.4
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 7.0e-167 590.9 356 78.7
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 7.0e-167 590.9 353 79.9
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 9.2e-167 590.5 335 83.3
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 9.2e-167 590.5 351 81.5
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.2e-166 590.1 335 83.3
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.0e-166 589.3 335 83.3
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 2.0e-166 589.3 376 77.1
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 4.5e-166 588.2 391 73.4
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 4.5e-166 588.2 338 81.4
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 7.7e-166 587.4 337 83.1
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 7.7e-166 587.4 338 82.5
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 7.7e-166 587.4 369 77.0
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 7.7e-166 587.4 338 82.5
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 1.3e-165 586.6 353 79.3
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 1.3e-165 586.6 353 78.5
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 1.7e-165 586.3 353 79.0
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 1.7e-165 586.3 338 81.1
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 2.3e-165 585.9 350 78.9
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 2.3e-165 585.9 327 85.0
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.9e-165 585.5 357 77.9
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 2.9e-165 585.5 352 79.8
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 5.0e-165 584.7 337 82.2
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 6.6e-165 584.3 353 78.2
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 8.6e-165 583.9 355 78.3
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 1.9e-164 582.8 351 78.3
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 2.5e-164 582.4 378 74.9
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 2.5e-164 582.4 353 78.8
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.3e-164 582.0 390 72.6
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 9.5e-164 580.5 353 78.2
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 9.5e-164 580.5 351 80.1
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 1.2e-163 580.1 385 73.8
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.6e-163 579.7 353 79.3
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 2.1e-163 579.3 378 74.6
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 6.1e-163 577.8 353 77.9
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 8.0e-163 577.4 353 78.5
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 2.3e-162 575.9 379 74.4
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 3.0e-162 575.5 464 64.7
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 1.2e-161 573.5 351 78.1
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 3.4e-161 572.0 352 77.0
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 3.4e-161 572.0 388 72.2
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 4.4e-161 571.6 353 77.3
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 5.7e-161 571.2 356 75.6
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 5.7e-161 571.2 351 76.9
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 7.5e-161 570.9 353 76.2
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 3.7e-160 568.5 353 77.3
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 3.7e-160 568.5 353 76.8
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 4.9e-160 568.2 347 77.8
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 1.2e-158 563.5 352 75.3
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 7.8e-158 560.8 353 75.1
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 1.7e-157 559.7 349 75.4
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.9e-157 558.5 352 74.1
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 6.6e-157 557.8 319 82.1
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 1.5e-156 556.6 353 74.2
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.9e-156 556.2 350 74.0
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.3e-156 555.4 352 73.9
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 5.2e-154 548.1 356 72.5
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 2.2e-152 542.7 352 72.7
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 1.1e-148 530.4 355 73.2
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 4.3e-148 528.5 360 69.4
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 9.5e-148 527.3 355 73.0
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 7.1e-143 511.1 355 68.5
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 7.8e-142 507.7 330 72.7
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.5e-140 503.4 335 69.6
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 2.0e-137 493.0 332 72.0
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 4.4e-137 491.9 365 66.3
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.4e-135 486.9 351 70.7
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 2.3e-133 479.6 354 63.6
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 4.0e-130 468.8 352 67.3
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 4.9e-128 461.8 375 63.2
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.2e-120 436.4 390 59.0
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 3.2e-119 432.6 329 61.4
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 1.2e-113 414.1 376 56.9
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.4e-111 407.1 241 80.9
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 1.1e-106 391.0 240 77.1
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 1.5e-105 387.1 275 69.1
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 1.5e-105 387.1 236 77.1
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 2.6e-105 386.3 226 79.6
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 7.6e-105 384.8 328 56.1
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 3.5e-102 375.9 327 57.2
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 6.7e-101 371.7 371 50.7
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.2e-70 271.2 292 45.2
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 1.2e-65 254.6 175 70.9
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 5.5e-63 245.7 190 65.8
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 2.7e-57 226.9 180 61.7
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 8.6e-48 195.3 170 60.0
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.0e-44 184.1 131 68.7
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 1.8e-13 81.3 90 48.9
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 1.8e-13 81.3 90 48.9
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 4.0e-13 80.1 59 69.5
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 3.5e-09 67.0 35 82.9


User provided reference genes

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