Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G197800 Theobroma cacao HOM05D006633 ORTHO05D008259 1.1e-162 576.6 291 100.0
Gohir.A08G014400 Gossypium hirsutum HOM05D006633 ORTHO05D008259 4.5e-129 464.9 285 83.9
Gohir.D08G024900 Gossypium hirsutum HOM05D006633 ORTHO05D008259 4.9e-128 461.5 285 83.5
Duzib168G0472 Durio zibethinus HOM05D006633 ORTHO05D008259 8.4e-128 460.7 291 83.2
Gorai.004G020300 Gossypium raimondii HOM05D006633 ORTHO05D008259 7.1e-127 457.6 285 82.8
COL.COLO4_35074 Corchorus olitorius HOM05D006633 ORTHO05D008259 8.2e-115 417.5 226 91.6
Manes.17G052500 Manihot esculenta HOM05D006633 ORTHO05D008259 1.0e-104 384.0 247 77.3
Potri.003G222900 Populus trichocarpa HOM05D006633 ORTHO05D008259 1.9e-103 379.8 220 84.1
QL01p010451 Quercus lobata HOM05D006633 ORTHO05D008259 4.2e-103 378.6 282 68.4
Sabra03G0165800 Salix brachista HOM05D006633 ORTHO05D008259 6.1e-102 374.8 220 83.6
GSVIVG01025500001 Vitis vinifera HOM05D006633 ORTHO05D008259 7.9e-102 374.4 211 85.8
Ciclev10015880m.g Citrus clementina HOM05D006633 ORTHO05D008259 1.8e-101 373.2 289 67.8
TWI34G2025 Tripterygium wilfordii HOM05D006633 ORTHO05D008259 3.3e-100 369.0 294 69.0
Cpa.g.sc119.27 Carica papaya HOM05D006633 ORTHO05D008259 5.7e-100 368.2 221 81.9
Atru.chr3.2065 Acer truncatum HOM05D006633 ORTHO05D008259 1.3e-99 367.1 281 68.0
Actinidia00914 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.3e-99 367.1 247 74.9
CiPaw.13G178900 Carya illinoinensis HOM05D006633 ORTHO05D008259 1.7e-99 366.7 209 84.7
Lj2A793G3 Lonicera japonica HOM05D006633 ORTHO05D008259 6.3e-99 364.8 215 82.3
Oeu060898.1 Olea europaea HOM05D006633 ORTHO05D008259 6.3e-99 364.8 232 77.6
PGR102G1790 Punica granatum HOM05D006633 ORTHO05D008259 4.1e-98 362.1 232 78.0
Nn7g35825 Nelumbo nucifera HOM05D006633 ORTHO05D008259 9.1e-98 360.9 296 66.6
Prupe.6G001800 Prunus persica HOM05D006633 ORTHO05D008259 1.5e-97 360.1 232 77.6
Eucgr.B03588 Eucalyptus grandis HOM05D006633 ORTHO05D008259 2.0e-97 359.8 305 64.6
THA.LOC104813477 Tarenaya hassleriana HOM05D006633 ORTHO05D008259 7.7e-97 357.8 241 73.0
FAN21G1569 Fragaria x ananassa HOM05D006633 ORTHO05D008259 1.0e-96 357.5 286 65.7
TAR633G1699 Trochodendron aralioides HOM05D006633 ORTHO05D008259 1.0e-96 357.5 286 66.8
HanXRQChr14g0437151 Helianthus annuus HOM05D006633 ORTHO05D008259 1.7e-96 356.7 285 67.0
Cc01_g00320 Coffea canephora HOM05D006633 ORTHO05D008259 2.2e-96 356.3 210 81.4
RcHm_v2.0_Chr5g0084001 Rosa chinensis HOM05D006633 ORTHO05D008259 2.9e-96 355.9 244 73.4
CANSAT11G1927 Cannabis sativa HOM05D006633 ORTHO05D008259 8.5e-96 354.4 259 69.5
Actinidia16230 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.1e-95 354.0 247 72.5
FAN11G3357 Fragaria x ananassa HOM05D006633 ORTHO05D008259 1.1e-95 354.0 286 65.4
ECA238G0103 Erigeron canadensis HOM05D006633 ORTHO05D008259 1.4e-95 353.6 244 72.1
FAN16G0253 Fragaria x ananassa HOM05D006633 ORTHO05D008259 2.5e-95 352.8 213 80.3
CAN.G431.4 Capsicum annuum HOM05D006633 ORTHO05D008259 7.2e-95 351.3 209 81.3
Sopen01g017000 Solanum pennellii HOM05D006633 ORTHO05D008259 2.1e-94 349.7 272 66.5
PSO384G1804 Papaver somniferum HOM05D006633 ORTHO05D008259 1.4e-93 347.1 301 62.8
Solyc01g028870.3 Solanum lycopersicum HOM05D006633 ORTHO05D008259 1.4e-93 347.1 199 81.9
MD11G1001800 Malus domestica HOM05D006633 ORTHO05D008259 2.3e-93 346.3 251 71.3
SGA_v2.0_scaffold3G01722 Striga asiatica HOM05D000412 ORTHO05D000429 3.0e-93 345.9 209 78.5
PSO339G0565 Papaver somniferum HOM05D006633 ORTHO05D008259 1.1e-92 344.0 298 62.4
CsaV3_4G017570 Cucumis sativus L. HOM05D006633 ORTHO05D008259 3.3e-92 342.4 261 65.9
Lsat_1_v5_gn_2_51040 Lactuca sativa HOM05D006633 ORTHO05D008259 3.3e-92 342.4 211 78.7
MELO3C014730.2 Cucumis melo HOM05D006633 ORTHO05D008259 4.4e-92 342.0 215 76.3
Aa31LG5G11730 Aethionema arabicum HOM05D006633 ORTHO05D008259 9.7e-92 340.9 282 63.5
Rhsim13G0234200 Rhododendron simsii HOM05D006633 ORTHO05D008259 2.8e-91 339.3 208 78.8
Sp7g24290 Schrenkiella parvula HOM05D006633 ORTHO05D008259 2.8e-91 339.3 282 64.9
Sed0023197 Sechium edule HOM05D006633 ORTHO05D008259 2.8e-91 339.3 260 65.4
AL7G26590 Arabidopsis lyrata HOM05D006633 ORTHO05D008259 6.3e-91 338.2 297 62.3
AT4G26370 Arabidopsis thaliana HOM05D006633 ORTHO05D008259 1.8e-90 336.7 284 64.4
A03p56650 Brassica napus HOM05D006633 ORTHO05D008259 1.8e-90 336.7 288 62.5
BraA01t01713Z Brassica rapa HOM05D006633 ORTHO05D008259 3.1e-90 335.9 296 62.8
BraA03t14735Z Brassica rapa HOM05D006633 ORTHO05D008259 3.1e-90 335.9 290 62.4
BcaNung02426 Brassica carinata HOM05D006633 ORTHO05D008259 4.1e-90 335.5 283 63.6
Carub.0007s1458 Capsella rubella HOM05D006633 ORTHO05D008259 4.1e-90 335.5 248 69.4
Thhalv10025833m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 4.1e-90 335.5 278 65.1
Nitab4.5_0000075g0280 Nicotiana tabacum HOM05D006633 ORTHO05D008259 7.0e-90 334.7 275 64.7
CARHR233930 Cardamine hirsuta HOM05D006633 ORTHO05D008259 9.1e-90 334.3 211 77.3
Migut.D02577 Erythranthe guttata HOM05D006633 ORTHO05D008259 9.1e-90 334.3 238 68.9
Nitab4.5_0008322g0010 Nicotiana tabacum HOM05D006633 ORTHO05D008259 9.1e-90 334.3 275 64.4
Glyma.07G224400 Glycine max HOM05D006633 ORTHO05D008259 2.6e-89 332.8 249 68.7
C07p54850 Brassica napus HOM05D006633 ORTHO05D008259 5.9e-89 331.6 297 60.9
Phvul.002G101000 Phaseolus vulgaris HOM05D006633 ORTHO05D008259 7.7e-89 331.3 250 68.0
C01p22200 Brassica napus HOM05D006633 ORTHO05D008259 1.3e-88 330.5 289 63.3
BolC1t02150H Brassica oleracea HOM05D006633 ORTHO05D008259 1.3e-88 330.5 289 63.3
Glyma.20G024400 Glycine max HOM05D006633 ORTHO05D008259 1.3e-88 330.5 257 66.5
A01p17600 Brassica napus HOM05D006633 ORTHO05D008259 3.8e-88 328.9 297 61.6
arahy.Tifrunner.gnm1.ann1.B7F07X Arachis hypogaea HOM05D006633 ORTHO05D008259 8.5e-88 327.8 211 76.8
BcaC06g32755 Brassica carinata HOM05D006633 ORTHO05D008259 8.5e-88 327.8 292 61.0
MSTRG.18887 Avicennia marina HOM05D006633 ORTHO05D008259 3.2e-87 325.9 266 64.7
Aqoxy2G00572 Aquilegia oxysepala HOM05D006633 ORTHO05D008259 5.5e-87 325.1 258 65.1
Lalb_Chr09g0328921 Lupinus albus HOM05D006633 ORTHO05D008259 9.4e-87 324.3 200 78.5
Ca_18789_v3 Cicer arietinum L. HOM05D006633 ORTHO05D008259 1.0e-85 320.9 238 67.6
DCAR_001964 Daucus carota HOM05D006633 ORTHO05D008259 2.3e-85 319.7 227 70.5
Haze_22925 Corylus avellana HOM05D006633 ORTHO05D008259 3.0e-85 319.3 223 72.2
SalBow2G0284 Salvia bowleyana HOM05D006633 ORTHO05D008259 8.8e-85 317.8 210 72.4
BcaC09g50693 Brassica carinata HOM05D006633 ORTHO05D008259 5.7e-84 315.1 295 60.3
Lj4g0000825 Lotus japonicus HOM05D006633 ORTHO05D008259 8.3e-83 311.2 199 74.9
Hund16643 Selenicereus undatus HOM05D006633 ORTHO05D008259 5.3e-82 308.5 209 72.2
Peaxi162Scf00186g01010 Petunia axillaris HOM05D006633 ORTHO05D008259 9.1e-82 307.8 224 69.2
ATR0697G106 Amborella trichopoda HOM05D006633 ORTHO05D008259 1.7e-80 303.5 278 56.8
Psat7g133240 Pisum sativum HOM05D006633 ORTHO05D008259 8.5e-80 301.2 230 66.5
BcaC06g32753 Brassica carinata HOM05D006633 ORTHO05D008259 4.7e-78 295.4 213 71.4
Sc22g0000060 Simmondsia chinensis HOM05D006633 ORTHO05D008259 4.7e-78 295.4 182 77.5
AUR62011548 Chenopodium quinoa HOM05D006633 ORTHO05D008259 8.0e-78 294.7 199 73.4
Ah.01g020780 Amaranthus hybridus HOM05D006633 ORTHO05D008259 1.4e-77 293.9 207 69.6
HPP92_027714 Vanilla planifolia HOM05D006633 ORTHO05D008259 9.8e-76 287.7 203 66.5
Os03g0656900 Oryza sativa ssp. japonica HOM05D006633 ORTHO05D008259 2.8e-75 286.2 197 68.5
Sc11g0009420 Simmondsia chinensis HOM05D006633 ORTHO05D008259 2.4e-74 283.1 173 79.2
VMungo0251G3366 Vigna mungo HOM05D006633 ORTHO05D008259 1.2e-73 280.8 220 66.4
arahy.Tifrunner.gnm1.ann1.UCUG5X Arachis hypogaea HOM05D006633 ORTHO05D008259 2.5e-71 273.1 258 58.1
Medtr4g083370 Medicago truncatula HOM05D006633 ORTHO05D008259 2.3e-69 266.5 234 63.2
TPR.G34055 Trifolium pratense HOM05D006633 ORTHO05D008259 8.9e-69 264.6 178 71.3
unitig_22.g5858 Utricularia gibba HOM05D006633 ORTHO05D008259 1.0e-64 251.1 204 60.8
FvH4_3g45910 Fragaria vesca HOM05D006633 ORTHO05D008259 2.9e-64 249.6 232 59.1
FAN25G3644 Fragaria x ananassa HOM05D006633 ORTHO05D008259 4.0e-61 239.2 226 57.5
Hma1.2p1_2123F.1_g314533 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 1.1e-58 231.1 156 75.0
Thhalv10026040m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 4.6e-57 225.7 214 59.8
Zm00001eb052690 Zea mays HOM05D006633 ORTHO05D008259 2.3e-53 213.4 211 54.0
vmacro04274 Vaccinium macrocarpon HOM05D006633 ORTHO05D008259 1.1e-42 177.9 149 59.7
CSS0002459 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 1.9e-42 177.2 103 84.5
SMO228G0116 Selaginella moellendorffii HOM05D006633 ORTHO05D008259 2.3e-40 170.2 197 45.7
CSS0031986 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 1.4e-37 161.0 175 51.4
ClCG02G024430 Citrullus lanatus HOM05D006633 ORTHO05D008259 1.5e-36 157.5 95 80.0
Pp3c10_23950 Physcomitrium patens HOM05D006633 ORTHO05D008259 1.3e-35 154.5 196 40.8
Hund09324 Selenicereus undatus HOM05D006633 ORTHO05D008259 1.3e-35 154.5 83 84.3
Zm00001eb218200 Zea mays HOM05D006633 ORTHO05D008259 2.4e-34 150.2 110 62.7
EL10Ac9g21929 Beta vulgaris HOM05D006633 ORTHO05D008259 1.5e-31 141.0 91 73.6
AUR62016367 Chenopodium quinoa HOM05D006633 ORTHO05D008259 6.9e-29 132.1 91 69.2
Mapoly0006s0155 Marchantia polymorpha HOM05D006633 ORTHO05D008259 1.7e-27 127.5 221 34.4
HanXRQChr15g0489901 Helianthus annuus HOM05D006633 ORTHO05D008259 1.4e-26 124.4 77 77.9
COL.COLO4_37952 Corchorus olitorius HOM05D006633 ORTHO05D008259 4.8e-22 109.4 58 91.4
Hma1.2p1_1877F.1_g306330 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 1.1e-21 108.2 127 48.0
HanXRQChr11g0336181 Helianthus annuus HOM05D006633 ORTHO05D008259 1.5e-20 104.4 70 74.3
SEGI_24744 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 3.8e-19 99.8 60 75.0
CDE10G1061 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 6.4e-19 99.0 69 65.2
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 6.0e-17 92.4 59 72.9
CDE10G0014 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 5.6e-15 85.9 49 81.6
SEGI_20653 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 3.5e-09 66.6 57 56.1
AagrBONN_evm.TU.Sc2ySwM_117.296 Anthoceros agrestis HOM05D006633 ORTHO05D008259 8.2e-06 55.5 60 41.7


User provided reference genes

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