Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 0.0e+00 1078.5 546 100.0
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 6.2e-265 917.1 544 85.5
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.2e-252 876.3 548 81.6
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.7e-252 875.2 548 81.4
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.3e-250 867.8 548 80.7
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.5e-244 848.2 471 88.5
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.8e-233 812.0 535 75.3
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.9e-227 791.6 535 73.5
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 2.8e-225 785.4 531 73.6
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 4.9e-222 774.6 527 73.8
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 6.5e-222 774.2 536 72.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 7.1e-221 770.8 536 71.6
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.6e-220 769.6 528 72.7
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 6.7e-219 764.2 532 72.2
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.1e-218 763.5 550 70.4
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.5e-218 763.1 531 71.8
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.6e-217 759.6 529 72.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 6.3e-217 757.7 522 72.2
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 2.4e-216 755.7 540 70.2
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 5.0e-214 748.0 538 69.9
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 2.1e-212 742.7 534 70.2
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 2.3e-211 739.2 539 67.9
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 3.9e-211 738.4 495 73.1
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 6.7e-211 737.6 536 68.3
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.5e-210 736.5 546 68.7
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.2e-209 732.6 549 67.6
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.2e-209 732.6 537 68.3
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.8e-209 732.3 532 70.1
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.8e-208 729.6 535 68.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 5.3e-208 728.0 533 67.7
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 9.1e-208 727.2 537 67.8
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.0e-206 723.8 533 67.9
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.7e-206 723.0 529 68.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 8.5e-206 720.7 527 68.3
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-205 719.9 532 66.9
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 2.5e-205 719.2 534 69.3
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.2e-204 716.8 514 68.7
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 3.0e-203 712.2 532 66.9
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.0e-202 709.5 527 67.4
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 5.7e-202 708.0 540 65.7
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.3e-201 706.8 557 65.0
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.7e-201 706.4 497 69.4
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-201 706.4 528 66.9
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.2e-201 706.1 528 65.9
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.8e-201 705.7 540 65.6
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 8.2e-201 704.1 527 66.8
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 4.1e-200 701.8 496 70.2
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.4e-199 698.7 528 65.3
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 3.4e-199 698.7 527 66.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.7e-199 697.6 543 66.5
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 7.7e-199 697.6 529 66.4
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 3.8e-198 695.3 531 64.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 5.5e-197 691.4 520 66.3
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 7.9e-196 687.6 539 64.4
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.9e-196 687.6 534 65.5
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-195 687.2 487 68.4
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 5.2e-195 684.9 535 63.2
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 5.7e-194 681.4 520 66.5
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.8e-193 679.1 564 60.8
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.7e-193 678.7 488 68.4
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 4.8e-193 678.3 503 66.0
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.1e-192 677.2 510 66.9
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.3e-190 670.2 522 64.9
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.2e-190 669.5 486 67.9
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.5e-189 666.8 525 64.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.9e-189 666.4 542 62.7
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.6e-188 662.1 529 63.5
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 3.0e-187 659.1 527 62.8
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 3.0e-187 659.1 519 62.2
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.2e-185 652.9 543 63.2
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.2e-185 652.9 488 67.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 4.8e-185 651.7 524 62.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.1e-184 650.6 497 67.2
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.2e-183 647.1 622 55.5
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.7e-183 646.0 494 65.8
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.2e-182 642.9 419 74.2
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.9e-182 642.5 475 67.6
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.0e-180 634.4 537 64.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-177 626.3 528 61.4
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 3.7e-177 625.5 511 61.6
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 3.1e-176 622.5 545 58.3
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 7.7e-175 617.8 486 65.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 3.2e-173 612.5 514 59.7
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 5.5e-173 611.7 536 56.5
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.2e-173 611.3 521 58.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 8.0e-172 607.8 527 60.9
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.3e-171 606.3 488 62.3
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 3.7e-169 599.0 506 59.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 6.6e-166 588.2 492 59.3
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-164 583.9 495 59.2
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-164 583.2 539 55.7
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-163 580.5 498 58.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 4.0e-163 578.9 521 57.0
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.0e-163 578.9 399 74.4
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.3e-161 573.9 503 57.5
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 4.9e-161 572.0 488 59.6
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.7e-159 566.2 492 57.1
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 5.0e-158 562.0 452 61.1
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.8e-156 556.2 454 64.3
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.0e-155 554.3 431 66.8
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.0e-155 554.3 529 58.2
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-154 549.7 492 58.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.4e-154 548.9 497 55.7
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.2e-151 540.8 547 52.7
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 8.9e-147 524.6 489 55.4
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.5e-146 523.9 537 56.1
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 6.4e-145 518.5 522 53.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.2e-143 514.2 481 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.5e-143 512.7 505 50.9
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.5e-141 506.5 490 54.9
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.6e-138 496.5 495 51.3
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.1e-135 486.9 328 73.2
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 6.0e-135 485.3 501 49.7
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 7.8e-135 485.0 394 59.1
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 6.6e-134 481.9 425 56.0
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.8e-131 473.8 394 58.1
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 4.3e-125 452.6 394 61.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.1e-124 450.3 344 66.6
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 9.0e-123 444.9 460 49.8
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 7.6e-122 441.8 325 67.1
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.2e-119 434.5 288 74.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 9.6e-117 424.9 330 63.9
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.7e-116 422.9 339 64.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-111 407.9 414 54.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.7e-111 406.8 641 37.0
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.6e-108 397.5 441 50.8
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.4e-107 393.7 343 54.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 5.8e-106 389.0 332 58.4
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.2e-104 382.9 290 66.6
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.9e-88 330.9 454 44.1
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.4e-85 319.7 232 61.2
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.5e-81 305.8 223 61.0
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.2e-80 302.4 275 52.4
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.2e-76 288.9 348 44.8
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 9.1e-75 285.4 609 32.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 7.5e-69 265.8 470 35.1
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 6.3e-68 262.7 190 69.5
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 6.3e-68 262.7 193 67.9
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.0e-66 257.7 257 55.3
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 1.7e-65 254.6 195 64.1
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.0e-65 253.1 189 66.1
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 6.5e-65 252.7 149 79.9
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 8.5e-65 252.3 188 66.5
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-64 251.9 190 66.8
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.2e-56 223.4 195 52.8
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 3.4e-53 213.8 146 67.8
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 8.3e-52 209.1 139 73.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-47 194.9 147 64.6
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.4e-43 181.0 130 66.2
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 7.0e-43 179.5 186 54.3
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.0e-41 174.1 118 69.5
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.7e-39 166.8 198 45.5
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.4e-37 160.6 174 46.0
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 7.5e-37 159.5 219 42.5
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.7e-34 151.0 143 58.0
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.6e-34 150.2 98 70.4
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.9e-24 118.2 76 67.1
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-18 99.0 96 44.8
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.0e-17 95.9 66 65.2
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.2e-15 89.0 72 63.9
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.6e-15 88.6 72 61.1
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 6.4e-12 76.6 66 57.6


User provided reference genes

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